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1 <?xml version="1.0"?>
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2 <!-- borrowed by Ross Lazarus from Lance Parson's htseq code -->
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3 <tool_dependency>
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4 <package name="package_numpy_1_7" version="1.7.1">
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5 <repository name="package_numpy_1_7" owner="blankenberg" toolshed="http://testtoolshed.g2.bx.psu.edu"/>
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6 </package>
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7 <package name="package_matplotlib_1_2" version="1.2">
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8 <repository name="package_matplotlib_1_2" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"/>
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9 </package>
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10 <package name="package_htseq_0.5_4" version="0.5.4p3">
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11 <install version="1.0">
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12 <actions>
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13 <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.5.4p3.tar.gz</action>
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14 <action type="make_directory">$INSTALL_DIR/lib/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise -->
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15 <action type="make_directory">$INSTALL_DIR/lib64/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise -->
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16 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python && python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
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17 <action type="set_environment">
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18 <environment_variable name="PYTHONPATH" action="append_to">$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>
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19 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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20 </action>
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21 </actions>
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22 </install>
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23 <readme>
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24 Installation of HTSeq requires Python 2.5+ (does not yet work with Python 3), and the Numpy Python package.
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25 </readme>
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26 </package>
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27 </tool_dependency>
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