Mercurial > repos > fubar > htseq_bams_to_count_matrix

changeset 64:d300bc688e95 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/htseq commit e5a5ad091c621348dc6ce2df861475ebc54a380e
author iuc
date Tue, 13 Oct 2015 17:24:08 -0400
parents e34313b3898b
children
files htseqsams2mx.xml tool_dependencies.xml
diffstat 2 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/htseqsams2mx.xml	Sat May 30 22:48:55 2015 -0400
+++ b/htseqsams2mx.xml	Tue Oct 13 17:24:08 2015 -0400
@@ -21,11 +21,11 @@
     #end if
   </command>
   <inputs>
-    <param format="gtf" name="gfffile" type="data" label="Gene model (GFF) file to count reads over from your current history" size="100" />
+    <param format="gtf" name="gfffile" type="data" label="Gene model (GFF) file to count reads over from your current history" />
     <param name="mapqMin" label="Filter reads with mapq below than this value"
     help="0 to count any mapping quality read. Otherwise only reads at or above specified mapq will be counted"
     type="integer" value="5"/>
-    <param name="title" label="Name for this job's output file" type="text" size="80" value="bams to DGE count matrix"/>
+    <param name="title" label="Name for this job's output file" type="text" value="bams to DGE count matrix"/>
     <param name="stranded" value="false" type="boolean" label="Reads are stranded - use strand in counting" display="checkbox"
       truevalue="yes" falsevalue="no" checked="no" help="Check this ONLY if you know your sequences are strand specific" />
     <param name="model"  type="select" label="Model for counting reads over the supplied gene model- see HTSeq docs"
@@ -55,7 +55,7 @@
         <option value="XS:A">Might be useful for tophat</option>
     </param>
 
-    <param name="samfiles" type="data" label="bam/sam file from your history" format="sam,bam" size="100" multiple="true"/>
+    <param name="samfiles" type="data" label="bam/sam file from your history" format="sam,bam" multiple="true"/>
   </inputs>
   <outputs>
     <data format="tabular" name="outfile" label="${title}_htseqsams2mx.xls" />
--- a/tool_dependencies.xml	Sat May 30 22:48:55 2015 -0400
+++ b/tool_dependencies.xml	Tue Oct 13 17:24:08 2015 -0400
@@ -4,7 +4,7 @@
         <repository changeset_revision="247e5e5bee87" name="package_pysam_0_7_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="matplotlib" version="1.2.1">
-        <repository changeset_revision="55a75739919b" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="de13f10b590f" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="htseq" version="0.5.4p3">
         <install version="1.0">
@@ -14,7 +14,7 @@
                         <repository changeset_revision="247e5e5bee87" name="package_pysam_0_7_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                             <package name="pysam" version="0.7.6" />
                         </repository>
-                        <repository changeset_revision="55a75739919b" name="package_matplotlib_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <repository changeset_revision="de13f10b590f" name="package_matplotlib_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                             <package name="matplotlib" version="1.2.1" />
                         </repository>
                 </action>