Mercurial > repos > fubar > htseq_bams_to_count_matrix
changeset 8:ba2ee6c83fe5 draft
Uploaded
author | fubar |
---|---|
date | Thu, 06 Jun 2013 20:38:58 -0400 |
parents | 1c69e32649cb |
children | c3d6ac0d796e |
files | htseq_bams_to_count_matrix/htseqsams2mx.xml htseq_bams_to_count_matrix/tool_dependencies.xml |
diffstat | 2 files changed, 7 insertions(+), 8 deletions(-) [+] |
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--- a/htseq_bams_to_count_matrix/htseqsams2mx.xml Thu Jun 06 20:35:40 2013 -0400 +++ b/htseq_bams_to_count_matrix/htseqsams2mx.xml Thu Jun 06 20:38:58 2013 -0400 @@ -4,7 +4,7 @@ <requirement type="package" version="2.4.11">freetype</requirement> <requirement type="package" version="0.5.4p3">package_htseq_0_5_4</requirement> <requirement type="package" version="1.7.1">package_numpy_1_7</requirement> - <requirement type="package" version="1.2_1">matplotlib</requirement> + <requirement type="package" version="1.2.1">matplotlib</requirement> </requirements> <command interpreter="python"> htseqsams2mx.py -g "$gfffile" -o "$outfile" -m "$model" --id_attribute "$id_attr" --feature_type "$feature_type"
--- a/htseq_bams_to_count_matrix/tool_dependencies.xml Thu Jun 06 20:35:40 2013 -0400 +++ b/htseq_bams_to_count_matrix/tool_dependencies.xml Thu Jun 06 20:38:58 2013 -0400 @@ -14,14 +14,13 @@ <!-- populate the environment variables from the dependend repos --> <action type="set_environment_for_install"> - <repository changeset_revision="ad6ebe2c75ef" name="package_numpy_1_7" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/"> - <package name="numpy" version="1.7.1" /> - </repository> - <repository changeset_revision="4e54e357ac25" name="package_freetype_2_4" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/"> - <package name="freetype" version="2.4.11" /> - </repository> + <package name="package_numpy_1_7" toolshed="http://testtoolshed.g2.bx.psu.edu" version="1.7.1"> + <repository name="package_numpy_1_7" owner="blankenberg" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="freetype" toolshed="http://testtoolshed.g2.bx.psu.edu" version="2.4.11"> + <repository name="package_freetype_2_4" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> + </package> </action> - <!-- install matplotlib --> <action type="make_directory">$INSTALL_DIR/lib/python</action> <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$PYTHONPATH_NUMPY &&