Mercurial > repos > fubar > htseq_bams_to_count_matrix
changeset 27:b5bcb6c514b9 draft
Uploaded
| author | fubar |
|---|---|
| date | Thu, 13 Jun 2013 21:14:50 -0400 |
| parents | 90ed6ffc6544 |
| children | ef33922cb45e |
| files | htseq_bams_to_count_matrix/tool_dependencies.xml |
| diffstat | 1 files changed, 12 insertions(+), 12 deletions(-) [+] |
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--- a/htseq_bams_to_count_matrix/tool_dependencies.xml Thu Jun 13 20:53:49 2013 -0400 +++ b/htseq_bams_to_count_matrix/tool_dependencies.xml Thu Jun 13 21:14:50 2013 -0400 @@ -1,13 +1,13 @@ <?xml version="1.0"?> <tool_dependency> <package name="numpy" version="1.7.1"> - <repository changeset_revision="af9633757cf0" name="package_numpy_1_7" owner="blankenberg" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository name="package_numpy_1_7" owner="blankenberg" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </package> <package name="freetype" version="2.4.11"> - <repository changeset_revision="4e54e357ac25" name="package_freetype_2_4" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> + <repository name="package_freetype_2_4" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> </package> <package name="matplotlib" version="1.2.1"> - <repository changeset_revision="db5e6a215790" name="package_matplotlib_lite" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> + <repository name="package_matplotlib_lite" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> </package> <package name="htseq" version="0.5.4p3"> <install version="1.0"> @@ -16,15 +16,15 @@ <action type="make_directory">$INSTALL_DIR/lib/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise --> <action type="make_directory">$INSTALL_DIR/lib64/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise --> <action type="set_environment_for_install"> - <package name="numpy" toolshed="http://testtoolshed.g2.bx.psu.edu" version="1.7.1"> - <repository name="package_numpy_1_7" owner="blankenberg" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> - </package> - <package name="freetype" toolshed="http://testtoolshed.g2.bx.psu.edu" version="2.4.11"> - <repository name="package_freetype_2_4" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> - </package> - <package name="matplotlib" toolshed="http://testtoolshed.g2.bx.psu.edu" version="1.2.1"> - <repository name="package_matplotlib_lite" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> - </package> + <repository name="package_numpy_1_7" owner="blankenberg" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" > + <package name="numpy" version="1.7.1"/> + </repository> + <repository name="package_freetype_2_4" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/"> + <package name="freetype" version="2.4.11" /> + </repository> + <repository name="package_matplotlib_lite" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> + <package name="matplotlib" version="1.2.1" /> + </repository> </action> <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python && python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action> <action type="set_environment">