Mercurial > repos > fubar > htseq_bams_to_count_matrix

changeset 1:6aa7ffe331c0 draft

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Uploaded
author fubar
date Thu, 06 Jun 2013 08:31:39 -0400
parents f2310e26012f
children 4800361923a0
files htseq_bams_to_count_matrix/htseqsams2mx.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/htseq_bams_to_count_matrix/htseqsams2mx.xml	Thu Jun 06 08:18:03 2013 -0400
+++ b/htseq_bams_to_count_matrix/htseqsams2mx.xml	Thu Jun 06 08:31:39 2013 -0400
@@ -7,7 +7,7 @@
     htseqsams2mx.py -g "$gfffile" -o "$outfile" -m "$model" --id_attribute "$id_attr" --feature_type "$feature_type"
     --samf "'$firstsamf','${firstsamf.name}'"
     #for $s in $samfiles:
-    --samf "'${s.samf}','${s.samf.name}'"
+    --samf "'${s.samf}','${s.samf.name}'" 
     #end for
     </command>
   <inputs>