Mercurial > repos > fubar > htseq_bams_to_count_matrix

changeset 23:617d402f4c32 draft

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Uploaded
author fubar
date Thu, 13 Jun 2013 06:39:20 -0400
parents fd07a014d2e7
children 48c66da0ef3a
files htseq_bams_to_count_matrix/tool_dependencies.xml
diffstat 1 files changed, 2 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/htseq_bams_to_count_matrix/tool_dependencies.xml	Thu Jun 13 06:32:03 2013 -0400
+++ b/htseq_bams_to_count_matrix/tool_dependencies.xml	Thu Jun 13 06:39:20 2013 -0400
@@ -22,7 +22,8 @@
                 </action>
                 <!-- install matplotlib -->
                 <action type="make_directory">$INSTALL_DIR/lib/python</action>
-                <action type="shell_command">export PYTHONPATH=$INSTALL_DIR/lib/python:$PYTHONPATH_NUMPY:$PYTHONPATH &amp;&amp; 
+                 <action type="shell_command">echo "### PYTHONPATH = $PYTHONPATH, PYTHONPATH_NUMPY = $PYTHONPATH_NUMPY"</action>
+               <action type="shell_command">export PYTHONPATH=$INSTALL_DIR/lib/python:$PYTHONPATH_NUMPY:$PYTHONPATH &amp;&amp; 
                     export CPLUS_INCLUDE_PATH=$FREETYPE_INCLUDE_DIR:$FREETYPE_INCLUDE_DIR/freetype2/:$CPLUS_INCLUDE_PATH &amp;&amp; 
                     export LIBRARY_PATH=$FREETYPE_LIB_DIR:$LIBRARY_PATH &amp;&amp; 
                     python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>