Mercurial > repos > fubar > htseq_bams_to_count_matrix

changeset 36:281d06b2437d draft

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Uploaded
author fubar
date Thu, 08 Aug 2013 08:11:22 -0400
parents e427310cc7af
children f69b55c71ae5
files htseq_bams_to_count_matrix/tool_dependencies.xml
diffstat 1 files changed, 7 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/htseq_bams_to_count_matrix/tool_dependencies.xml	Thu Aug 08 08:02:08 2013 -0400
+++ b/htseq_bams_to_count_matrix/tool_dependencies.xml	Thu Aug 08 08:11:22 2013 -0400
@@ -3,6 +3,9 @@
     <package name="numpy" version="1.7.1">
         <repository changeset_revision="af9633757cf0" name="package_numpy_1_7" owner="blankenberg" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
+    <package name="pysam" version="0.7.5">
+        <repository changeset_revision="a4e35f23093f" name="package_pysam_0_7_5" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    </package>
     <package name="freetype" version="2.4.11">
         <repository changeset_revision="4e54e357ac25" name="package_freetype_2_4" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
     </package>
@@ -19,6 +22,9 @@
                         <repository changeset_revision="af9633757cf0" name="package_numpy_1_7" owner="blankenberg" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
                             <package name="numpy" version="1.7.1" />
                         </repository>
+                        <repository changeset_revision="a4e35f23093f" name="package_pysam_0_7_5" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                            <package name="pysam" version="0.7.5" />
+                        </repository>
                         <repository changeset_revision="4e54e357ac25" name="package_freetype_2_4" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/">
                             <package name="freetype" version="2.4.11" />
                         </repository>
@@ -34,7 +40,7 @@
             </actions>
         </install>
         <readme>
-            Installation of HTSeq requires Python 2.5+ (does not yet work with Python 3), and the Numpy Python package. 
+            Installation of HTSeq requires Python 2.5+ (does not yet work with Python 3), pysam and the Numpy Python package. 
             Note this uses the matplotlib lite version dependent on the lite version of numpy - no atlas compilation 
         </readme>
     </package>