Mercurial > repos > fubar > htseq_bams_to_count_matrix
changeset 11:1deb788531e5 draft
Uploaded
| author | fubar |
|---|---|
| date | Thu, 06 Jun 2013 21:37:21 -0400 |
| parents | d77a47cc498f |
| children | 71f4b3d0e681 |
| files | htseq_bams_to_count_matrix/tool_dependencies.xml |
| diffstat | 1 files changed, 6 insertions(+), 5 deletions(-) [+] |
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--- a/htseq_bams_to_count_matrix/tool_dependencies.xml Thu Jun 06 21:17:14 2013 -0400 +++ b/htseq_bams_to_count_matrix/tool_dependencies.xml Thu Jun 06 21:37:21 2013 -0400 @@ -12,15 +12,16 @@ <!-- first action is always downloading --> <action type="download_by_url">http://downloads.sourceforge.net/project/matplotlib/matplotlib/matplotlib-1.2.1/matplotlib-1.2.1.tar.gz</action> - <!-- populate the environment variables from the dependend repos --> + <!-- populate the environment variables from the dependend repos <action type="set_environment_for_install"> - <package name="package_numpy_1_7" toolshed="http://testtoolshed.g2.bx.psu.edu" version="1.7.1"> - <repository name="package_numpy_1_7" owner="blankenberg" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <package name="package_numpy_1_7" version="1.7.1"> + <repository name="package_numpy_1_7" owner="blankenberg" toolshed="http://testtoolshed.g2.bx.psu.edu" prior_installation_required="True"/> </package> - <package name="freetype" toolshed="http://testtoolshed.g2.bx.psu.edu" version="2.4.11"> - <repository name="package_freetype_2_4" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> + <package name="freetype" version="2.4.11"> + <repository name="package_freetype_2_4" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/" prior_installation_required="True"/> </package> </action> + --> <!-- install matplotlib --> <action type="make_directory">$INSTALL_DIR/lib/python</action> <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$PYTHONPATH_NUMPY &&