Mercurial > repos > fubar > htseq_bams_to_count_matrix

changeset 41:15131d78a39c draft

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Uploaded
author fubar
date Wed, 20 Nov 2013 17:38:26 -0500
parents 7da5a9e8ef58
children 5c783df4f31c
files htseq_bams_to_count_matrix/tool_dependencies.xml
diffstat 1 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/htseq_bams_to_count_matrix/tool_dependencies.xml	Tue Nov 19 20:56:20 2013 -0500
+++ b/htseq_bams_to_count_matrix/tool_dependencies.xml	Wed Nov 20 17:38:26 2013 -0500
@@ -19,17 +19,17 @@
                 <action type="make_directory">$INSTALL_DIR/lib/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise -->
                 <action type="make_directory">$INSTALL_DIR/lib64/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise -->
                 <action type="set_environment_for_install">
-                        <repository changeset_revision="84125ffacb90" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                        <repository changeset_revision="84125ffacb90" name="package_numpy_1_7" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
                             <package name="numpy" version="1.7" />
                         </repository>
-                        <repository changeset_revision="247e5e5bee87" name="package_pysam_0_7_6" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                        <repository changeset_revision="247e5e5bee87" name="package_pysam_0_7_6" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
                             <package name="pysam" version="0.7.6" />
                         </repository>
-                        <repository changeset_revision="fe5cfaf931ff" name="package_freetype_2_4" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/">
+                        <repository changeset_revision="fe5cfaf931ff" name="package_freetype_2_4" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu/">
                             <package name="freetype" version="2.4" />
                         </repository>
-                        <repository changeset_revision="966f29c955b9" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/">
-                            <package name="matplotlib_1_2" version="1.2" />
+                        <repository changeset_revision="966f29c955b9" name="package_matplotlib_1_2" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu/">
+                            <package name="matplotlib" version="1.2" />
                         </repository>
                 </action>
                 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python &amp;&amp; python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>