Mercurial > repos > fubar > htseq_bams_to_count_matrix

comparison htseqsams2mx.xml @ 45:19207379d4cf draft

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author fubar
date Thu, 21 Nov 2013 17:48:39 -0500
parents 390cb852aae7
children 0df2b662113e
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44:b71da02aa36a 45:19207379d4cf
2 <description>using HTSeq code</description> 2 <description>using HTSeq code</description>
3 <stdio> 3 <stdio>
4 <regex match=".*" source="both" level="warning" description="chatter from HTSeq:"/> 4 <regex match=".*" source="both" level="warning" description="chatter from HTSeq:"/>
5 </stdio> 5 </stdio>
6 <requirements> 6 <requirements>
7 <requirement type="package" version="1.7">numpy</requirement>
8 <requirement type="package" version="0.7.6">pysam</requirement> 7 <requirement type="package" version="0.7.6">pysam</requirement>
9 <requirement type="package" version="2.4">freetype</requirement>
10 <requirement type="package" version="1.2">matplotlib</requirement> 8 <requirement type="package" version="1.2">matplotlib</requirement>
11 <requirement type="package" version="0.5.4p3">htseq</requirement> 9 <requirement type="package" version="0.5.4p3">htseq</requirement>
12 </requirements> 10 </requirements>
13 <command interpreter="python"> 11 <command interpreter="python">
14 htseqsams2mx.py -g "$gfffile" -o "$outfile" -m "$model" --id_attribute "$id_attr" --feature_type "$feature_type" 12 htseqsams2mx.py -g "$gfffile" -o "$outfile" -m "$model" --id_attribute "$id_attr" --feature_type "$feature_type"