Mercurial > repos > fubar > htseq_bams_to_count_matrix

annotate test-data/rn4_chr20_100k.gtf @ 48:58fe9656873a draft

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author fubar
date Thu, 21 Nov 2013 18:05:49 -0500
parents 390cb852aae7
children
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43
390cb852aae7 Uploaded
fubar
parents:
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1 chr20 protein_coding CDS 801 1238 . + 0 exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000730"; gene_name "F1M7K0_RAT"; p_id "P14715"; protein_id "ENSRNOP00000000957"; transcript_id "ENSRNOT00000000957"; transcript_name "F1M7K0_RAT"; tss_id "TSS11562";
390cb852aae7 Uploaded
fubar
parents:
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2 chr20 protein_coding exon 801 1238 . + . exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000730"; gene_name "F1M7K0_RAT"; p_id "P14715"; transcript_id "ENSRNOT00000000957"; transcript_name "F1M7K0_RAT"; tss_id "TSS11562";
390cb852aae7 Uploaded
fubar
parents:
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3 chr20 protein_coding CDS 1742 1976 . + 0 exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000730"; gene_name "F1M7K0_RAT"; p_id "P14715"; protein_id "ENSRNOP00000000957"; transcript_id "ENSRNOT00000000957"; transcript_name "F1M7K0_RAT"; tss_id "TSS11562";
390cb852aae7 Uploaded
fubar
parents:
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4 chr20 protein_coding exon 1742 1976 . + . exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000730"; gene_name "F1M7K0_RAT"; p_id "P14715"; transcript_id "ENSRNOT00000000957"; transcript_name "F1M7K0_RAT"; tss_id "TSS11562";
390cb852aae7 Uploaded
fubar
parents:
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5 chr20 protein_coding CDS 2016 2177 . + 2 exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000730"; gene_name "F1M7K0_RAT"; p_id "P14715"; protein_id "ENSRNOP00000000957"; transcript_id "ENSRNOT00000000957"; transcript_name "F1M7K0_RAT"; tss_id "TSS11562";
390cb852aae7 Uploaded
fubar
parents:
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6 chr20 protein_coding exon 2016 2177 . + . exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000730"; gene_name "F1M7K0_RAT"; p_id "P14715"; transcript_id "ENSRNOT00000000957"; transcript_name "F1M7K0_RAT"; tss_id "TSS11562";
390cb852aae7 Uploaded
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7 chr20 protein_coding CDS 2263 2342 . + 2 exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000730"; gene_name "F1M7K0_RAT"; p_id "P14715"; protein_id "ENSRNOP00000000957"; transcript_id "ENSRNOT00000000957"; transcript_name "F1M7K0_RAT"; tss_id "TSS11562";
390cb852aae7 Uploaded
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parents:
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8 chr20 protein_coding exon 2263 2342 . + . exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000730"; gene_name "F1M7K0_RAT"; p_id "P14715"; transcript_id "ENSRNOT00000000957"; transcript_name "F1M7K0_RAT"; tss_id "TSS11562";
390cb852aae7 Uploaded
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9 chr20 protein_coding CDS 2345 2533 . + 0 exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000730"; gene_name "F1M7K0_RAT"; p_id "P14715"; protein_id "ENSRNOP00000000957"; transcript_id "ENSRNOT00000000957"; transcript_name "F1M7K0_RAT"; tss_id "TSS11562";
390cb852aae7 Uploaded
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parents:
diff changeset
10 chr20 protein_coding exon 2345 2533 . + . exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000730"; gene_name "F1M7K0_RAT"; p_id "P14715"; transcript_id "ENSRNOT00000000957"; transcript_name "F1M7K0_RAT"; tss_id "TSS11562";
390cb852aae7 Uploaded
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11 chr20 protein_coding CDS 19528 19708 . + 0 exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; protein_id "ENSRNOP00000044070"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451";
390cb852aae7 Uploaded
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12 chr20 protein_coding CDS 19528 19708 . + 0 exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; protein_id "ENSRNOP00000000956"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451";
390cb852aae7 Uploaded
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13 chr20 protein_coding exon 19528 19708 . + . exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451";
390cb852aae7 Uploaded
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14 chr20 protein_coding exon 19528 19708 . + . exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451";
390cb852aae7 Uploaded
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15 chr20 protein_coding start_codon 19528 19530 . + 0 exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451";
390cb852aae7 Uploaded
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16 chr20 protein_coding start_codon 19528 19530 . + 0 exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451";
390cb852aae7 Uploaded
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17 chr20 protein_coding CDS 21979 22014 . + 2 exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; protein_id "ENSRNOP00000044070"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451";
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18 chr20 protein_coding exon 21979 22014 . + . exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451";
390cb852aae7 Uploaded
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19 chr20 protein_coding CDS 25349 25525 . + 2 exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; protein_id "ENSRNOP00000044070"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451";
390cb852aae7 Uploaded
fubar
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20 chr20 protein_coding CDS 25349 25525 . + 2 exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; protein_id "ENSRNOP00000000956"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451";
390cb852aae7 Uploaded
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21 chr20 protein_coding exon 25349 25525 . + . exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451";
390cb852aae7 Uploaded
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22 chr20 protein_coding exon 25349 25525 . + . exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451";
390cb852aae7 Uploaded
fubar
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23 chr20 protein_coding CDS 35197 35476 . + 2 exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; protein_id "ENSRNOP00000044070"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451";
390cb852aae7 Uploaded
fubar
parents:
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24 chr20 protein_coding CDS 35197 35476 . + 2 exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; protein_id "ENSRNOP00000000956"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451";
390cb852aae7 Uploaded
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parents:
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25 chr20 protein_coding exon 35197 35476 . + . exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451";
390cb852aae7 Uploaded
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26 chr20 protein_coding exon 35197 35476 . + . exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451";
390cb852aae7 Uploaded
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27 chr20 protein_coding CDS 36764 36883 . + 1 exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; protein_id "ENSRNOP00000044070"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451";
390cb852aae7 Uploaded
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parents:
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28 chr20 protein_coding CDS 36764 36883 . + 1 exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; protein_id "ENSRNOP00000000956"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451";
390cb852aae7 Uploaded
fubar
parents:
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29 chr20 protein_coding exon 36764 36883 . + . exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451";
390cb852aae7 Uploaded
fubar
parents:
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30 chr20 protein_coding exon 36764 36883 . + . exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451";
390cb852aae7 Uploaded
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parents:
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31 chr20 protein_coding CDS 49040 49276 . + 1 exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; protein_id "ENSRNOP00000044070"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451";
390cb852aae7 Uploaded
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parents:
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32 chr20 protein_coding CDS 49040 49276 . + 1 exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; protein_id "ENSRNOP00000000956"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451";
390cb852aae7 Uploaded
fubar
parents:
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33 chr20 protein_coding exon 49040 49276 . + . exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451";
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34 chr20 protein_coding exon 49040 49276 . + . exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451";
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35 chr20 protein_coding CDS 55193 55331 . + 1 exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; protein_id "ENSRNOP00000044070"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451";
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parents:
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36 chr20 protein_coding CDS 55193 55331 . + 1 exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; protein_id "ENSRNOP00000000956"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451";
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parents:
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37 chr20 protein_coding exon 55193 55331 . + . exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451";
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parents:
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38 chr20 protein_coding exon 55193 55331 . + . exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451";
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39 chr20 protein_coding CDS 55883 56011 . + 0 exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; protein_id "ENSRNOP00000044070"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451";
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parents:
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40 chr20 protein_coding CDS 55883 56011 . + 0 exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; protein_id "ENSRNOP00000000956"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451";
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41 chr20 protein_coding exon 55883 56124 . + . exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451";
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42 chr20 protein_coding exon 55883 56124 . + . exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451";
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43 chr20 protein_coding stop_codon 56012 56014 . + 0 exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P13601"; transcript_id "ENSRNOT00000049573"; transcript_name "Tmlhe"; tss_id "TSS451";
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44 chr20 protein_coding stop_codon 56012 56014 . + 0 exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000729"; gene_name "Tmlhe"; p_id "P3227"; transcript_id "ENSRNOT00000000956"; transcript_name "TMLH_RAT"; tss_id "TSS451";
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45 chr20 protein_coding exon 66518 66785 . + . exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000728"; gene_name "Clic2"; p_id "P19357"; transcript_id "ENSRNOT00000000955"; transcript_name "Clic2"; tss_id "TSS24592";
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46 chr20 protein_coding CDS 66729 66785 . + 0 exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000728"; gene_name "Clic2"; p_id "P19357"; protein_id "ENSRNOP00000000955"; transcript_id "ENSRNOT00000000955"; transcript_name "Clic2"; tss_id "TSS24592";
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47 chr20 protein_coding start_codon 66729 66731 . + 0 exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000728"; gene_name "Clic2"; p_id "P19357"; transcript_id "ENSRNOT00000000955"; transcript_name "Clic2"; tss_id "TSS24592";
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parents:
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48 chr20 protein_coding CDS 75931 76040 . + 0 exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000728"; gene_name "Clic2"; p_id "P19357"; protein_id "ENSRNOP00000000955"; transcript_id "ENSRNOT00000000955"; transcript_name "Clic2"; tss_id "TSS24592";
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49 chr20 protein_coding exon 75931 76040 . + . exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000728"; gene_name "Clic2"; p_id "P19357"; transcript_id "ENSRNOT00000000955"; transcript_name "Clic2"; tss_id "TSS24592";
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parents:
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50 chr20 protein_coding CDS 76165 76290 . + 1 exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000728"; gene_name "Clic2"; p_id "P19357"; protein_id "ENSRNOP00000000955"; transcript_id "ENSRNOT00000000955"; transcript_name "Clic2"; tss_id "TSS24592";
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parents:
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51 chr20 protein_coding exon 76165 76290 . + . exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000728"; gene_name "Clic2"; p_id "P19357"; transcript_id "ENSRNOT00000000955"; transcript_name "Clic2"; tss_id "TSS24592";
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parents:
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52 chr20 protein_coding CDS 79941 80047 . + 1 exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000728"; gene_name "Clic2"; p_id "P19357"; protein_id "ENSRNOP00000000955"; transcript_id "ENSRNOT00000000955"; transcript_name "Clic2"; tss_id "TSS24592";
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parents:
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53 chr20 protein_coding exon 79941 80047 . + . exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000728"; gene_name "Clic2"; p_id "P19357"; transcript_id "ENSRNOT00000000955"; transcript_name "Clic2"; tss_id "TSS24592";
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parents:
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54 chr20 protein_coding CDS 80692 80873 . + 2 exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000728"; gene_name "Clic2"; p_id "P19357"; protein_id "ENSRNOP00000000955"; transcript_id "ENSRNOT00000000955"; transcript_name "Clic2"; tss_id "TSS24592";
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parents:
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55 chr20 protein_coding exon 80692 80873 . + . exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000728"; gene_name "Clic2"; p_id "P19357"; transcript_id "ENSRNOT00000000955"; transcript_name "Clic2"; tss_id "TSS24592";
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parents:
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56 chr20 protein_coding CDS 81142 81294 . + 0 exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000728"; gene_name "Clic2"; p_id "P19357"; protein_id "ENSRNOP00000000955"; transcript_id "ENSRNOT00000000955"; transcript_name "Clic2"; tss_id "TSS24592";
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57 chr20 protein_coding exon 81142 81536 . + . exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000728"; gene_name "Clic2"; p_id "P19357"; transcript_id "ENSRNOT00000000955"; transcript_name "Clic2"; tss_id "TSS24592";
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parents:
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58 chr20 protein_coding stop_codon 81295 81297 . + 0 exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000000728"; gene_name "Clic2"; p_id "P19357"; transcript_id "ENSRNOT00000000955"; transcript_name "Clic2"; tss_id "TSS24592";
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59 chr20 protein_coding exon 92810 93748 . - . exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000029622"; gene_name "Olr1668"; p_id "P5423"; transcript_id "ENSRNOT00000047483"; transcript_name "Olr1668"; tss_id "TSS17091";
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parents:
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60 chr20 protein_coding stop_codon 92810 92812 . - 0 exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000029622"; gene_name "Olr1668"; p_id "P5423"; transcript_id "ENSRNOT00000047483"; transcript_name "Olr1668"; tss_id "TSS17091";
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parents:
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61 chr20 protein_coding CDS 92813 93748 . - 0 exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000029622"; gene_name "Olr1668"; p_id "P5423"; protein_id "ENSRNOP00000042115"; transcript_id "ENSRNOT00000047483"; transcript_name "Olr1668"; tss_id "TSS17091";
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parents:
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62 chr20 protein_coding start_codon 93746 93748 . - 0 exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSRNOG00000029622"; gene_name "Olr1668"; p_id "P5423"; transcript_id "ENSRNOT00000047483"; transcript_name "Olr1668"; tss_id "TSS17091";