Mercurial > repos > fubar > htseq_bams_to_count_matrix
annotate tool_dependencies.xml @ 62:040d87a2ba01 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/htseq commit 0d7fcf576fd797327af90538b216473ef13daa41
| author | iuc |
|---|---|
| date | Sat, 23 May 2015 23:01:17 -0400 |
| parents | 0c871984a634 |
| children | e34313b3898b |
| rev | line source |
|---|---|
| 56 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 3 <package name="pysam" version="0.7.6"> | |
| 4 <repository changeset_revision="247e5e5bee87" name="package_pysam_0_7_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 5 </package> | |
| 6 <package name="matplotlib" version="1.2.1"> | |
|
62
040d87a2ba01
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/htseq commit 0d7fcf576fd797327af90538b216473ef13daa41
iuc
parents:
61
diff
changeset
|
7 <repository changeset_revision="dc29f1f60887" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
| 56 | 8 </package> |
| 9 <package name="htseq" version="0.5.4p3"> | |
| 10 <install version="1.0"> | |
| 11 <actions> | |
| 12 <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.6.1.tar.gz</action> | |
| 13 <action type="set_environment_for_install"> | |
| 14 <repository changeset_revision="247e5e5bee87" name="package_pysam_0_7_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> | |
| 15 <package name="pysam" version="0.7.6" /> | |
| 16 </repository> | |
|
62
040d87a2ba01
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/htseq commit 0d7fcf576fd797327af90538b216473ef13daa41
iuc
parents:
61
diff
changeset
|
17 <repository changeset_revision="dc29f1f60887" name="package_matplotlib_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
| 56 | 18 <package name="matplotlib" version="1.2.1" /> |
| 19 </repository> | |
| 20 </action> | |
| 21 <action type="make_directory">$INSTALL_DIR/lib/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise --> | |
| 22 <action type="make_directory">$INSTALL_DIR/lib64/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise --> | |
| 23 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python && python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action> | |
| 24 <action type="set_environment"> | |
| 25 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable> | |
| 26 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
| 27 </action> | |
| 28 </actions> | |
| 29 </install> | |
| 30 <readme> | |
| 31 Installation of HTSeq requires Python 2.5+ (does not yet work with Python 3), pysam and the Numpy Python package. | |
| 32 Note this uses the matplotlib lite version dependent on the lite version of numpy - no atlas compilation | |
| 33 </readme> | |
| 34 </package> | |
| 35 </tool_dependency> |