Mercurial > repos > fubar > genomic_association_tester

changeset 2:c12eed13059b draft

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Uploaded
author fubar
date Tue, 27 Aug 2013 23:34:19 -0400
parents 98db9665b15e
children 2428abaf9413
files rlGAT/tool_dependencies.xml
diffstat 1 files changed, 3 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/rlGAT/tool_dependencies.xml	Tue Aug 27 23:20:50 2013 -0400
+++ b/rlGAT/tool_dependencies.xml	Tue Aug 27 23:34:19 2013 -0400
@@ -20,7 +20,9 @@
                         </repository>
                 </action>
                 <action type="download_by_url">https://genomic-association-tester.googlecode.com/files/genomic-association-tester-0.1.tar.gz</action>
-                <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python &amp;&amp; python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
+                <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python &amp;&amp; python setup.py install</action>
+                <action type="shell_command">chmod ugo+rx scripts/*</action>
+                <action type="move_directory_files"><source_directory>scripts</source_directory> <destination_directory>$INSTALL_DIR/bin</destination_directory> </action>
                 <action type="set_environment">
                     <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>