Mercurial > repos > fubar > genomic_association_tester

changeset 5:99f146c2d943 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author fubar
date Wed, 28 Aug 2013 00:50:53 -0400
parents 5d32bf5945ce
children f118c5b066a0
files rlGAT/rlGAT.xml rlGAT/tool_dependencies.xml
diffstat 2 files changed, 9 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/rlGAT/rlGAT.xml	Tue Aug 27 23:44:08 2013 -0400
+++ b/rlGAT/rlGAT.xml	Wed Aug 28 00:50:53 2013 -0400
@@ -1,12 +1,13 @@
-<tool id="rlGAT" name="Genomic association tests" version="0.2">
+<tool id="rlGAT" name="Genomic association tests" version="0.1">
   <description>using the GAT package</description>
   <stdio>
    <regex match=".*" source="both" level="warning" description="stdout/err chatter from gat-run.py"/>
   </stdio>
- <requirements>
+  <requirements>
       <requirement type="package" version="0.1">gat</requirement>
       <requirement type="package" version="1.2.1">matplotliblite</requirement> 
       <requirement type="package" version="1.7.1">numpy</requirement> 
+      <requirement type="package" version="0.19.1">cython</requirement> 
   </requirements>
   <command>
     gat-run.py ${ignore_segments} --log="$logfile" --num-samples=$numsamp
--- a/rlGAT/tool_dependencies.xml	Tue Aug 27 23:44:08 2013 -0400
+++ b/rlGAT/tool_dependencies.xml	Wed Aug 28 00:50:53 2013 -0400
@@ -3,6 +3,9 @@
     <package name="numpy" version="1.7.1">
         <repository changeset_revision="af9633757cf0" name="package_numpy_1_7" owner="blankenberg" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
+    <package name="cython" version="0.19.1">
+        <repository changeset_revision="4c67294b22d1" name="package_cython_0_19_1" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    </package>
     <package name="matplotliblite" version="1.2.1">
         <repository changeset_revision="8df6bbf48c3a" name="package_matplotlib_lite" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
     </package>
@@ -16,6 +19,9 @@
                         <repository changeset_revision="af9633757cf0" name="package_numpy_1_7" owner="blankenberg" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
                             <package name="numpy" version="1.7.1" />
                         </repository>
+                        <repository changeset_revision="4c67294b22d1" name="package_cython_0_19_1" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                            <package name="cython" version="0.19.1" />
+                        </repository>
                         <repository changeset_revision="8df6bbf48c3a" name="package_matplotlib_lite" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/">
                             <package name="matplotliblite" version="1.2.1" />
                         </repository>