Mercurial > repos > fubar > genomic_association_tester

changeset 13:640b1432caa4 draft

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Uploaded
author fubar
date Thu, 29 Aug 2013 02:25:40 -0400
parents 2087a3ce6fb2
children 08cb01b2b9d7
files rlGAT/rlGAT.xml rlGAT/tool_dependencies.xml
diffstat 2 files changed, 2 insertions(+), 2 deletions(-) [+]
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line diff
--- a/rlGAT/rlGAT.xml	Thu Aug 29 01:58:27 2013 -0400
+++ b/rlGAT/rlGAT.xml	Thu Aug 29 02:25:40 2013 -0400
@@ -1,4 +1,4 @@
-<tool id="rlGAT" name="Genomic association tests" version="0.1.2">
+<tool id="rlGAT" name="Genomic association tests" version="0.1.3">
   <description>using the GAT package</description>
   <stdio>
    <regex match=".*" source="both" level="warning" description="stdout/err chatter from gat-run.py"/>
--- a/rlGAT/tool_dependencies.xml	Thu Aug 29 01:58:27 2013 -0400
+++ b/rlGAT/tool_dependencies.xml	Thu Aug 29 02:25:40 2013 -0400
@@ -27,7 +27,7 @@
                             <package name="matplotliblite" version="1.2.1" />
                         </repository>
                 </action>
-                <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python &amp;&amp; python setup.py build</action>
+                <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python &amp;&amp; python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
                 <action type="shell_command">chmod ugo+rx scripts/*</action>
                 <action type="move_directory_files"><source_directory>scripts</source_directory> <destination_directory>$INSTALL_DIR/bin</destination_directory> </action>
                 <action type="set_environment">