Mercurial > repos > fubar > fastqc_dist_0_10_1

changeset 0:f868c5a825fa draft

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initial upload for testing complex dependency
author fubar
date Wed, 05 Jun 2013 21:01:59 -0400
parents
children 46c0733c77c0
files dependencies/fastqc_dist_0.10.1/tool_dependencies.xml
diffstat 1 files changed, 21 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/dependencies/fastqc_dist_0.10.1/tool_dependencies.xml	Wed Jun 05 21:01:59 2013 -0400
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+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="fastqc_dist_0.10.1" version="0.10.1">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action>
+                <action type="move_directory_files">
+                    <source_directory>../FastQC</source_directory>
+                    <destination_directory>$INSTALL_DIR/fastqc_dist_0.10.1</destination_directory>
+                </action>                
+                <action type="shell_command">chmod ugo+x $INSTALL_DIR/fastqc_dist_0.10.1/fastqc</action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/fastqc_dist_0.10.1</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>You need a working unzip command line executable to install this tool and a suitable working Java run time environment 
+                available to all potential execution nodes for this tool to work.
+                Please see http://www.bioinformatics.babraham.ac.uk/projects/fastqc for all FastQC documentation</readme>
+    </package>
+</tool_dependency>