Mercurial > repos > fubar > fastqc_320

changeset 4:928de8b704bc draft

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Uploaded
author fubar
date Mon, 03 Jun 2013 23:01:20 -0400
parents 0bec27668020
children ad21e380de48
files FastQC/tool_dependencies.xml
diffstat 1 files changed, 7 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/FastQC/tool_dependencies.xml	Mon Jun 03 21:51:16 2013 -0400
+++ b/FastQC/tool_dependencies.xml	Mon Jun 03 23:01:20 2013 -0400
@@ -1,14 +1,17 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <set_environment version="1.0">
-        <environment_variable name="FASTQC_INSTALL_PATH" action="set_to">$INSTALL_DIR/jars/FastQC</environment_variable>   
+        <environment_variable name="FASTQC_INSTALL_PATH" action="set_to">$INSTALL_DIR/FastQC</environment_variable>   
     </set_environment>
     <package name="FastQC" version="0.10.1">
         <install version="1.0">
             <actions>
-                <action type="download_file">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action>
-                <action type="shell_command">unzip fastqc_v0.10.1.zip -d $INSTALL_DIR/jars/</action>
-                <action type="shell_command">chmod ugo+x $INSTALL_DIR/jars/FastQC/fastqc</action>
+                <action type="download_by_url">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action>
+                <action type="move_directory_file">
+                    <source>FastQC</source>
+                    <destination>$INSTALL_DIR/FastQC</destination>
+                </action>
+                <action type="shell_command">chmod ugo+x $INSTALL_DIR/FastQC/fastqc</action>
             </actions>
         </install>
         <readme>You need a working unzip command line executable to install this tool and a suitable working Java run time environment