Mercurial > repos > fubar > fastqc_320
changeset 12:7ea207f29f71 draft
Uploaded
author | fubar |
---|---|
date | Mon, 03 Jun 2013 23:53:17 -0400 |
parents | ed9e8630cda3 |
children | c3ac02711af2 |
files | FastQC/tool_dependencies.xml |
diffstat | 1 files changed, 7 insertions(+), 3 deletions(-) [+] |
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--- a/FastQC/tool_dependencies.xml Mon Jun 03 23:37:37 2013 -0400 +++ b/FastQC/tool_dependencies.xml Mon Jun 03 23:53:17 2013 -0400 @@ -1,13 +1,17 @@ <?xml version="1.0"?> <tool_dependency> - <set_environment version="1.0"> - <environment_variable name="FASTQC_BINARY_PATH">$INSTALL_DIR/FastQC/fastqc</environment_variable> - </set_environment> <package name="FastQC" version="0.10.1"> <install version="1.0"> <actions> <action type="download_by_url">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action> + <action type="move_directory_files"> + <source_directory>FastQC</source_directory> + <destination_directory>$INSTALL_DIR/FastQC</destination_directory> + </action> <action type="shell_command">chmod ugo+x $INSTALL_DIR/FastQC/fastqc</action> + <action type="set_environment"> + <environment_variable name="FASTQC_BINARY_PATH" action="set_to">$INSTALL_DIR/FastQC/fastqc</environment_variable> + </action> </actions> </install> <readme>You need a working unzip command line executable to install this tool and a suitable working Java run time environment