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changeset 2:45cd27a2ad5c draft

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Fix for installing fastqc zip - control zip to unzip into final resting place
author fubar
date Mon, 03 Jun 2013 21:46:21 -0400
parents 91cb2603b56c
children 0bec27668020
files FastQC/tool_dependencies.xml
diffstat 1 files changed, 2 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/FastQC/tool_dependencies.xml	Mon Jun 03 21:34:20 2013 -0400
+++ b/FastQC/tool_dependencies.xml	Mon Jun 03 21:46:21 2013 -0400
@@ -6,11 +6,8 @@
     <package name="FastQC" version="0.10.1">
         <install version="1.0">
             <actions>
-                <action type="download_by_url">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action>
-                <action type="move_directory_files">
-                    <source_directory>FastQC</source_directory>
-                    <destination_directory>$INSTALL_DIR/jars</destination_directory>
-                </action>
+                <action type="download_file">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action>
+                <action type="shell_command">unzip fastqc_v0.10.1.zip -d $INSTALL_DIR/jars/FastQC</action>
                 <action type="shell_command">chmod ugo+x $INSTALL_DIR/jars/FastQC/fastqc</action>
             </actions>
         </install>