Mercurial > repos > fubar > fastqc_320
comparison FastQC/tool_dependencies.xml @ 12:7ea207f29f71 draft
Uploaded
| author | fubar |
|---|---|
| date | Mon, 03 Jun 2013 23:53:17 -0400 |
| parents | ed9e8630cda3 |
| children | c3ac02711af2 |
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| 11:ed9e8630cda3 | 12:7ea207f29f71 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <set_environment version="1.0"> | |
| 4 <environment_variable name="FASTQC_BINARY_PATH">$INSTALL_DIR/FastQC/fastqc</environment_variable> | |
| 5 </set_environment> | |
| 6 <package name="FastQC" version="0.10.1"> | 3 <package name="FastQC" version="0.10.1"> |
| 7 <install version="1.0"> | 4 <install version="1.0"> |
| 8 <actions> | 5 <actions> |
| 9 <action type="download_by_url">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action> | 6 <action type="download_by_url">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action> |
| 7 <action type="move_directory_files"> | |
| 8 <source_directory>FastQC</source_directory> | |
| 9 <destination_directory>$INSTALL_DIR/FastQC</destination_directory> | |
| 10 </action> | |
| 10 <action type="shell_command">chmod ugo+x $INSTALL_DIR/FastQC/fastqc</action> | 11 <action type="shell_command">chmod ugo+x $INSTALL_DIR/FastQC/fastqc</action> |
| 12 <action type="set_environment"> | |
| 13 <environment_variable name="FASTQC_BINARY_PATH" action="set_to">$INSTALL_DIR/FastQC/fastqc</environment_variable> | |
| 14 </action> | |
| 11 </actions> | 15 </actions> |
| 12 </install> | 16 </install> |
| 13 <readme>You need a working unzip command line executable to install this tool and a suitable working Java run time environment | 17 <readme>You need a working unzip command line executable to install this tool and a suitable working Java run time environment |
| 14 available to all potential execution nodes for this tool to work. | 18 available to all potential execution nodes for this tool to work. |
| 15 Please see http://www.bioinformatics.babraham.ac.uk/projects/fastqc for all FastQC documentation</readme> | 19 Please see http://www.bioinformatics.babraham.ac.uk/projects/fastqc for all FastQC documentation</readme> |