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changeset 16:431f07da87b6 draft

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Uploaded
author fubar
date Sat, 08 Jun 2013 04:46:08 -0400
parents 9cbae8e9e3da
children 3c93150378dc
files fastqc/test-data/FastQC_1000gsample.fastq_html.html fastqc/test-data/fastqc_data.txt fastqc/test-data/fastqc_report.html fastqc/test-data/gentestdata.sh
diffstat 4 files changed, 1217 insertions(+), 3121 deletions(-) [+]
line wrap: on
line diff
--- a/fastqc/test-data/FastQC_1000gsample.fastq_html.html	Thu Jun 06 04:14:45 2013 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,1810 +0,0 @@
-<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Strict//EN">
-<html>
-<head><title>1000gsample.fastq FastQC Report</title>
-
-<style type="text/css">
-
- @media screen {
-  div.summary {
-    width: 18em;
-    position:fixed;
-    top: 3em;
-    margin:1em 0 0 1em;
-  }
-  
-  div.main {
-    display:block;
-    position:absolute;
-    overflow:auto;
-    height:auto;
-    width:auto;
-    top:4.5em;
-    bottom:2.3em;
-    left:18em;
-    right:0;
-    border-left: 1px solid #CCC;
-    padding:0 0 0 1em;
-    background-color: white;
-    z-index:1;
-  }
-  
-  div.header {
-    background-color: #EEE;
-    border:0;
-    margin:0;
-    padding: 0.5em;
-    font-size: 200%;
-    font-weight: bold;
-    position:fixed;
-    width:100%;
-    top:0;
-    left:0;
-    z-index:2;
-  }
-
-  div.footer {
-    background-color: #EEE;
-    border:0;
-    margin:0;
-	padding:0.5em;
-    height: 1.3em;
-	overflow:hidden;
-    font-size: 100%;
-    font-weight: bold;
-    position:fixed;
-    bottom:0;
-    width:100%;
-    z-index:2;
-  }
-  
-  img.indented {
-    margin-left: 3em;
-  }
- }
- 
- @media print {
-	img {
-		max-width:100% !important;
-		page-break-inside: avoid;
-	}
-	h2, h3 {
-		page-break-after: avoid;
-	}
-	div.header {
-      background-color: #FFF;
-    }
-	
- }
- 
- body {    
-  font-family: sans-serif;   
-  color: #000;   
-  background-color: #FFF;
-  border: 0;
-  margin: 0;
-  padding: 0;
-  }
-  
-  div.header {
-  border:0;
-  margin:0;
-  padding: 0.5em;
-  font-size: 200%;
-  font-weight: bold;
-  width:100%;
-  }    
-  
-  #header_title {
-  display:inline-block;
-  float:left;
-  clear:left;
-  }
-  #header_filename {
-  display:inline-block;
-  float:right;
-  clear:right;
-  font-size: 50%;
-  margin-right:2em;
-  text-align: right;
-  }
-
-  div.header h3 {
-  font-size: 50%;
-  margin-bottom: 0;
-  }
-  
-  div.summary ul {
-  padding-left:0;
-  list-style-type:none;
-  }
-  
-  div.summary ul li img {
-  margin-bottom:-0.5em;
-  margin-top:0.5em;
-  }
-	  
-  div.main {
-  background-color: white;
-  }
-      
-  div.module {
-  padding-bottom:1.5em;
-  padding-top:1.5em;
-  }
-	  
-  div.footer {
-  background-color: #EEE;
-  border:0;
-  margin:0;
-  padding: 0.5em;
-  font-size: 100%;
-  font-weight: bold;
-  width:100%;
-  }
-
-
-  a {
-  color: #000080;
-  }
-
-  a:hover {
-  color: #800000;
-  }
-      
-  h2 {
-  color: #800000;
-  padding-bottom: 0;
-  margin-bottom: 0;
-  clear:left;
-  }
-
-  table { 
-  margin-left: 3em;
-  text-align: center;
-  }
-  
-  th { 
-  text-align: center;
-  background-color: #000080;
-  color: #FFF;
-  padding: 0.4em;
-  }      
-  
-  td { 
-  font-family: monospace; 
-  text-align: left;
-  background-color: #EEE;
-  color: #000;
-  padding: 0.4em;
-  }
-
-  img {
-  padding-top: 0;
-  margin-top: 0;
-  border-top: 0;
-  }
-
-  
-  p {
-  padding-top: 0;
-  margin-top: 0;
-  }
-  
-</style>
-
-</head>
-<body>
-<div class="header">
-<div id="header_title"><img src="fastqc_icon.png" alt="FastQC">FastQC Report</div>
-<div id="header_filename">
-Wed 5 Jun 2013<br />
-1000gsample.fastq
-</div>
-</div>
-<div class="summary">
-<h2>Summary</h2>
-<ul>
-<li><img src="tick.png" alt="[PASS]"> <a href="#M0">Basic Statistics</a></li>
-<li><img src="warning.png" alt="[WARNING]"> <a href="#M1">Per base sequence quality</a></li>
-<li><img src="warning.png" alt="[WARNING]"> <a href="#M2">Per sequence quality scores</a></li>
-<li><img src="warning.png" alt="[WARNING]"> <a href="#M3">Per base sequence content</a></li>
-<li><img src="tick.png" alt="[PASS]"> <a href="#M4">Per base GC content</a></li>
-<li><img src="warning.png" alt="[WARNING]"> <a href="#M5">Per sequence GC content</a></li>
-<li><img src="tick.png" alt="[PASS]"> <a href="#M6">Per base N content</a></li>
-<li><img src="tick.png" alt="[PASS]"> <a href="#M7">Sequence Length Distribution</a></li>
-<li><img src="tick.png" alt="[PASS]"> <a href="#M8">Sequence Duplication Levels</a></li>
-<li><img src="warning.png" alt="[WARNING]"> <a href="#M9">Overrepresented sequences</a></li>
-<li><img src="error.png" alt="[FAIL]"> <a href="#M10">Kmer Content</a></li>
-</ul>
-</div>
-<div class="main">
-<div class="module"><h2 id="M0"><img src="tick.png" alt="[OK]"> Basic Statistics</h2>
-<table>
-<tr>
-<th>Measure</th>
-<th>Value</th>
-</tr>
-<tr>
-<td>Filename</td>
-<td>1000gsample.fastq</td>
-</tr>
-<tr>
-<td>File type</td>
-<td>Conventional base calls</td>
-</tr>
-<tr>
-<td>Encoding</td>
-<td>Sanger / Illumina 1.9</td>
-</tr>
-<tr>
-<td>Total Sequences</td>
-<td>5000</td>
-</tr>
-<tr>
-<td>Filtered Sequences</td>
-<td>0</td>
-</tr>
-<tr>
-<td>Sequence length</td>
-<td>54</td>
-</tr>
-<tr>
-<td>%GC</td>
-<td>43</td>
-</tr>
-</table>
-</div>
-<div class="module"><h2 id="M1"><img src="warning.png" alt="[WARN]"> Per base sequence quality</h2>
-<p><img class="indented" src="per_base_quality.png" alt="Per base quality graph"></p>
-</div>
-<div class="module"><h2 id="M2"><img src="warning.png" alt="[WARN]"> Per sequence quality scores</h2>
-<p><img class="indented" src="per_sequence_quality.png" alt="Per Sequence quality graph"></p>
-</div>
-<div class="module"><h2 id="M3"><img src="warning.png" alt="[WARN]"> Per base sequence content</h2>
-<p><img class="indented" src="per_base_sequence_content.png" alt="Per base sequence content"></p>
-</div>
-<div class="module"><h2 id="M4"><img src="tick.png" alt="[OK]"> Per base GC content</h2>
-<p><img class="indented" src="per_base_gc_content.png" alt="Per base GC content graph"></p>
-</div>
-<div class="module"><h2 id="M5"><img src="warning.png" alt="[WARN]"> Per sequence GC content</h2>
-<p><img class="indented" src="per_sequence_gc_content.png" alt="Per sequence GC content graph"></p>
-</div>
-<div class="module"><h2 id="M6"><img src="tick.png" alt="[OK]"> Per base N content</h2>
-<p><img class="indented" src="per_base_n_content.png" alt="N content graph"></p>
-</div>
-<div class="module"><h2 id="M7"><img src="tick.png" alt="[OK]"> Sequence Length Distribution</h2>
-<p><img class="indented" src="sequence_length_distribution.png" alt="Sequence length distribution"></p>
-</div>
-<div class="module"><h2 id="M8"><img src="tick.png" alt="[OK]"> Sequence Duplication Levels</h2>
-<p><img class="indented" src="duplication_levels.png" alt="Duplication level graph"></p>
-</div>
-<div class="module"><h2 id="M9"><img src="warning.png" alt="[WARN]"> Overrepresented sequences</h2>
-<table>
-<tr>
-<th>Sequence</th>
-<th>Count</th>
-<th>Percentage</th>
-<th>Possible Source</th>
-</tr>
-<tr>
-<td>CGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT</td>
-<td>7</td>
-<td>0.13999999999999999</td>
-<td>Illumina Paired End PCR Primer 2 (96% over 33bp)</td>
-</tr>
-<tr>
-<td>CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC</td>
-<td>7</td>
-<td>0.13999999999999999</td>
-<td>Illumina Paired End PCR Primer 2 (100% over 35bp)</td>
-</tr>
-</table>
-</div>
-<div class="module"><h2 id="M10"><img src="error.png" alt="[FAIL]"> Kmer Content</h2>
-<p><img class="indented" src="kmer_profiles.png" alt="Kmer graph"></p>
-<table>
-<tr>
-<th>Sequence</th>
-<th>Count</th>
-<th>Obs/Exp Overall</th>
-<th>Obs/Exp Max</th>
-<th>Max Obs/Exp Position</th>
-</tr>
-<tr>
-<td>CCCCC</td>
-<td>1180</td>
-<td>9.957459</td>
-<td>29.638031</td>
-<td>50</td>
-</tr>
-<tr>
-<td>AAAAA</td>
-<td>2175</td>
-<td>4.133217</td>
-<td>7.129659</td>
-<td>47</td>
-</tr>
-<tr>
-<td>CTCCC</td>
-<td>555</td>
-<td>3.668942</td>
-<td>11.56272</td>
-<td>11</td>
-</tr>
-<tr>
-<td>CCTCC</td>
-<td>525</td>
-<td>3.4706206</td>
-<td>11.56272</td>
-<td>14</td>
-</tr>
-<tr>
-<td>CTGGG</td>
-<td>465</td>
-<td>3.0945942</td>
-<td>8.331139</td>
-<td>39</td>
-</tr>
-<tr>
-<td>GGGGG</td>
-<td>350</td>
-<td>2.9865708</td>
-<td>12.818572</td>
-<td>41</td>
-</tr>
-<tr>
-<td>TGGAA</td>
-<td>800</td>
-<td>2.9261596</td>
-<td>6.397646</td>
-<td>17</td>
-</tr>
-<tr>
-<td>CCCAG</td>
-<td>455</td>
-<td>2.855999</td>
-<td>9.429343</td>
-<td>40</td>
-</tr>
-<tr>
-<td>GAATG</td>
-<td>775</td>
-<td>2.8347175</td>
-<td>10.053445</td>
-<td>20</td>
-</tr>
-<tr>
-<td>GTGTG</td>
-<td>530</td>
-<td>2.763172</td>
-<td>7.8240557</td>
-<td>33</td>
-</tr>
-<tr>
-<td>GGGAG</td>
-<td>435</td>
-<td>2.7487729</td>
-<td>6.3220544</td>
-<td>43</td>
-</tr>
-<tr>
-<td>TGTGT</td>
-<td>670</td>
-<td>2.7303638</td>
-<td>6.109576</td>
-<td>27</td>
-</tr>
-<tr>
-<td>ATGGA</td>
-<td>735</td>
-<td>2.688409</td>
-<td>6.397646</td>
-<td>20</td>
-</tr>
-<tr>
-<td>GGAAT</td>
-<td>730</td>
-<td>2.6701207</td>
-<td>7.3115954</td>
-<td>19</td>
-</tr>
-<tr>
-<td>GCTGG</td>
-<td>400</td>
-<td>2.6620166</td>
-<td>8.322799</td>
-<td>31</td>
-</tr>
-<tr>
-<td>GGAGG</td>
-<td>420</td>
-<td>2.6539874</td>
-<td>7.9104857</td>
-<td>40</td>
-</tr>
-<tr>
-<td>GCAGG</td>
-<td>405</td>
-<td>2.5535064</td>
-<td>14.17877</td>
-<td>16</td>
-</tr>
-<tr>
-<td>CCTGG</td>
-<td>375</td>
-<td>2.4900866</td>
-<td>6.6367774</td>
-<td>7</td>
-</tr>
-<tr>
-<td>CAGCC</td>
-<td>390</td>
-<td>2.4479992</td>
-<td>6.279937</td>
-<td>38</td>
-</tr>
-<tr>
-<td>GGCTG</td>
-<td>365</td>
-<td>2.4290898</td>
-<td>9.97737</td>
-<td>24</td>
-</tr>
-<tr>
-<td>TGGGA</td>
-<td>490</td>
-<td>2.4202447</td>
-<td>7.40506</td>
-<td>20</td>
-</tr>
-<tr>
-<td>CCAGC</td>
-<td>385</td>
-<td>2.4166145</td>
-<td>6.286229</td>
-<td>41</td>
-</tr>
-<tr>
-<td>AATGG</td>
-<td>660</td>
-<td>2.4140818</td>
-<td>5.4836965</td>
-<td>18</td>
-</tr>
-<tr>
-<td>GCCTG</td>
-<td>360</td>
-<td>2.3904827</td>
-<td>8.295971</td>
-<td>5</td>
-</tr>
-<tr>
-<td>GCCTC</td>
-<td>360</td>
-<td>2.3851626</td>
-<td>6.6286345</td>
-<td>31</td>
-</tr>
-<tr>
-<td>CCCTC</td>
-<td>360</td>
-<td>2.379854</td>
-<td>8.267352</td>
-<td>34</td>
-</tr>
-<tr>
-<td>CTGTG</td>
-<td>450</td>
-<td>2.3408678</td>
-<td>9.09864</td>
-<td>44</td>
-</tr>
-<tr>
-<td>GGAAG</td>
-<td>500</td>
-<td>2.3397229</td>
-<td>14.031037</td>
-<td>2</td>
-</tr>
-<tr>
-<td>CAGCA</td>
-<td>500</td>
-<td>2.32932</td>
-<td>10.47649</td>
-<td>14</td>
-</tr>
-<tr>
-<td>CAGGA</td>
-<td>495</td>
-<td>2.3111706</td>
-<td>13.99981</td>
-<td>17</td>
-</tr>
-<tr>
-<td>TCCCA</td>
-<td>470</td>
-<td>2.305994</td>
-<td>7.370469</td>
-<td>39</td>
-</tr>
-<tr>
-<td>CTGCC</td>
-<td>345</td>
-<td>2.285781</td>
-<td>8.277508</td>
-<td>10</td>
-</tr>
-<tr>
-<td>GGTGG</td>
-<td>340</td>
-<td>2.2677608</td>
-<td>5.009832</td>
-<td>42</td>
-</tr>
-<tr>
-<td>CCAGG</td>
-<td>360</td>
-<td>2.264732</td>
-<td>6.300251</td>
-<td>41</td>
-</tr>
-<tr>
-<td>TTCCT</td>
-<td>555</td>
-<td>2.2516627</td>
-<td>7.0961456</td>
-<td>1</td>
-</tr>
-<tr>
-<td>TCCCC</td>
-<td>335</td>
-<td>2.2145865</td>
-<td>8.267353</td>
-<td>29</td>
-</tr>
-<tr>
-<td>CAGGC</td>
-<td>350</td>
-<td>2.2018228</td>
-<td>6.300251</td>
-<td>42</td>
-</tr>
-<tr>
-<td>CTCCT</td>
-<td>425</td>
-<td>2.2009897</td>
-<td>6.4701333</td>
-<td>15</td>
-</tr>
-<tr>
-<td>GGCAG</td>
-<td>340</td>
-<td>2.1436844</td>
-<td>6.301676</td>
-<td>16</td>
-</tr>
-<tr>
-<td>CCCCA</td>
-<td>340</td>
-<td>2.129403</td>
-<td>6.26596</td>
-<td>31</td>
-</tr>
-<tr>
-<td>CTCTG</td>
-<td>410</td>
-<td>2.1280441</td>
-<td>5.1928453</td>
-<td>48</td>
-</tr>
-<tr>
-<td>TGGTG</td>
-<td>405</td>
-<td>2.1114805</td>
-<td>6.520046</td>
-<td>33</td>
-</tr>
-<tr>
-<td>TTCCA</td>
-<td>545</td>
-<td>2.094778</td>
-<td>6.7295837</td>
-<td>33</td>
-</tr>
-<tr>
-<td>CCCCT</td>
-<td>315</td>
-<td>2.0823722</td>
-<td>6.607268</td>
-<td>12</td>
-</tr>
-<tr>
-<td>CTCAG</td>
-<td>420</td>
-<td>2.0652719</td>
-<td>6.149596</td>
-<td>46</td>
-</tr>
-<tr>
-<td>AGGGA</td>
-<td>440</td>
-<td>2.0589561</td>
-<td>7.0225415</td>
-<td>31</td>
-</tr>
-<tr>
-<td>CAGAG</td>
-<td>440</td>
-<td>2.054374</td>
-<td>5.8390937</td>
-<td>38</td>
-</tr>
-<tr>
-<td>AGCAG</td>
-<td>440</td>
-<td>2.0543735</td>
-<td>10.499857</td>
-<td>15</td>
-</tr>
-<tr>
-<td>CCCTG</td>
-<td>310</td>
-<td>2.05389</td>
-<td>6.622006</td>
-<td>24</td>
-</tr>
-<tr>
-<td>CTTCC</td>
-<td>390</td>
-<td>2.0197318</td>
-<td>6.4701333</td>
-<td>17</td>
-</tr>
-<tr>
-<td>AGGAA</td>
-<td>580</td>
-<td>2.0098667</td>
-<td>10.390455</td>
-<td>18</td>
-</tr>
-<tr>
-<td>AGAGC</td>
-<td>430</td>
-<td>2.0076835</td>
-<td>10.499858</td>
-<td>5</td>
-</tr>
-<tr>
-<td>TCTCC</td>
-<td>385</td>
-<td>1.9938378</td>
-<td>5.181288</td>
-<td>29</td>
-</tr>
-<tr>
-<td>TCCTC</td>
-<td>385</td>
-<td>1.9938378</td>
-<td>5.181288</td>
-<td>48</td>
-</tr>
-<tr>
-<td>TCAGC</td>
-<td>405</td>
-<td>1.9915122</td>
-<td>12.286894</td>
-<td>44</td>
-</tr>
-<tr>
-<td>TGCTG</td>
-<td>380</td>
-<td>1.9767327</td>
-<td>6.5055346</td>
-<td>47</td>
-</tr>
-<tr>
-<td>CACCC</td>
-<td>315</td>
-<td>1.9728295</td>
-<td>6.259694</td>
-<td>9</td>
-</tr>
-<tr>
-<td>TCCTG</td>
-<td>380</td>
-<td>1.9723336</td>
-<td>6.4845653</td>
-<td>8</td>
-</tr>
-<tr>
-<td>CAGGG</td>
-<td>310</td>
-<td>1.954536</td>
-<td>6.3016763</td>
-<td>21</td>
-</tr>
-<tr>
-<td>GATGG</td>
-<td>395</td>
-<td>1.9510134</td>
-<td>6.1708827</td>
-<td>1</td>
-</tr>
-<tr>
-<td>TGGCT</td>
-<td>375</td>
-<td>1.9507233</td>
-<td>9.098641</td>
-<td>45</td>
-</tr>
-<tr>
-<td>AAGAG</td>
-<td>560</td>
-<td>1.9405607</td>
-<td>9.524584</td>
-<td>4</td>
-</tr>
-<tr>
-<td>TGTGG</td>
-<td>370</td>
-<td>1.929007</td>
-<td>6.5200467</td>
-<td>30</td>
-</tr>
-<tr>
-<td>CTGAG</td>
-<td>390</td>
-<td>1.9220302</td>
-<td>6.163313</td>
-<td>35</td>
-</tr>
-<tr>
-<td>CCTGT</td>
-<td>370</td>
-<td>1.9204301</td>
-<td>6.4845653</td>
-<td>6</td>
-</tr>
-<tr>
-<td>CAGAA</td>
-<td>555</td>
-<td>1.9189543</td>
-<td>6.0476103</td>
-<td>6</td>
-</tr>
-<tr>
-<td>TCCCT</td>
-<td>370</td>
-<td>1.9161558</td>
-<td>6.4766097</td>
-<td>33</td>
-</tr>
-<tr>
-<td>CCCAC</td>
-<td>305</td>
-<td>1.9101999</td>
-<td>6.259694</td>
-<td>4</td>
-</tr>
-<tr>
-<td>CACCA</td>
-<td>405</td>
-<td>1.8825499</td>
-<td>6.9757566</td>
-<td>33</td>
-</tr>
-<tr>
-<td>AAAGA</td>
-<td>730</td>
-<td>1.8732982</td>
-<td>5.1399345</td>
-<td>42</td>
-</tr>
-<tr>
-<td>CAGTG</td>
-<td>380</td>
-<td>1.8727474</td>
-<td>6.163313</td>
-<td>30</td>
-</tr>
-<tr>
-<td>GAAGA</td>
-<td>540</td>
-<td>1.8712552</td>
-<td>7.792842</td>
-<td>26</td>
-</tr>
-<tr>
-<td>TCTCT</td>
-<td>460</td>
-<td>1.8662432</td>
-<td>5.068676</td>
-<td>8</td>
-</tr>
-<tr>
-<td>TTTCC</td>
-<td>460</td>
-<td>1.8662429</td>
-<td>5.073749</td>
-<td>38</td>
-</tr>
-<tr>
-<td>GAGGC</td>
-<td>295</td>
-<td>1.8599615</td>
-<td>6.301676</td>
-<td>22</td>
-</tr>
-<tr>
-<td>TCTGT</td>
-<td>455</td>
-<td>1.8500755</td>
-<td>5.0850673</td>
-<td>49</td>
-</tr>
-<tr>
-<td>CCTGC</td>
-<td>275</td>
-<td>1.8219992</td>
-<td>9.93301</td>
-<td>6</td>
-</tr>
-<tr>
-<td>CCTCT</td>
-<td>350</td>
-<td>1.8125799</td>
-<td>7.7641597</td>
-<td>2</td>
-</tr>
-<tr>
-<td>TGCCT</td>
-<td>345</td>
-<td>1.7906713</td>
-<td>5.187652</td>
-<td>12</td>
-</tr>
-<tr>
-<td>TTCCC</td>
-<td>345</td>
-<td>1.7866857</td>
-<td>6.470133</td>
-<td>18</td>
-</tr>
-<tr>
-<td>GAGGG</td>
-<td>280</td>
-<td>1.769325</td>
-<td>6.3283887</td>
-<td>41</td>
-</tr>
-<tr>
-<td>CACAC</td>
-<td>380</td>
-<td>1.7663432</td>
-<td>5.813131</td>
-<td>33</td>
-</tr>
-<tr>
-<td>TCTGC</td>
-<td>340</td>
-<td>1.7647195</td>
-<td>5.1980486</td>
-<td>42</td>
-</tr>
-<tr>
-<td>CTGGC</td>
-<td>265</td>
-<td>1.7596608</td>
-<td>6.6434207</td>
-<td>43</td>
-</tr>
-<tr>
-<td>TTCAG</td>
-<td>455</td>
-<td>1.7527524</td>
-<td>9.6255</td>
-<td>12</td>
-</tr>
-<tr>
-<td>AGCCA</td>
-<td>375</td>
-<td>1.74699</td>
-<td>5.8319354</td>
-<td>39</td>
-</tr>
-<tr>
-<td>CTCTC</td>
-<td>335</td>
-<td>1.7348979</td>
-<td>5.1761065</td>
-<td>3</td>
-</tr>
-<tr>
-<td>GGGTG</td>
-<td>260</td>
-<td>1.7341703</td>
-<td>8.333022</td>
-<td>28</td>
-</tr>
-<tr>
-<td>TGGGG</td>
-<td>260</td>
-<td>1.7341703</td>
-<td>8.349721</td>
-<td>39</td>
-</tr>
-<tr>
-<td>GTGGG</td>
-<td>255</td>
-<td>1.7008208</td>
-<td>6.6730905</td>
-<td>31</td>
-</tr>
-<tr>
-<td>GGCCA</td>
-<td>270</td>
-<td>1.698549</td>
-<td>6.293945</td>
-<td>43</td>
-</tr>
-<tr>
-<td>GCCCC</td>
-<td>200</td>
-<td>1.6914694</td>
-<td>6.3460584</td>
-<td>32</td>
-</tr>
-<tr>
-<td>CTTTG</td>
-<td>415</td>
-<td>1.6874313</td>
-<td>5.0799813</td>
-<td>2</td>
-</tr>
-<tr>
-<td>ACACA</td>
-<td>485</td>
-<td>1.6731915</td>
-<td>5.1721287</td>
-<td>14</td>
-</tr>
-<tr>
-<td>GTGGT</td>
-<td>320</td>
-<td>1.6683302</td>
-<td>5.216037</td>
-<td>31</td>
-</tr>
-<tr>
-<td>CTCAC</td>
-<td>340</td>
-<td>1.6681659</td>
-<td>7.363092</td>
-<td>31</td>
-</tr>
-<tr>
-<td>TGCTT</td>
-<td>410</td>
-<td>1.6671008</td>
-<td>5.090162</td>
-<td>40</td>
-</tr>
-<tr>
-<td>GGGGC</td>
-<td>195</td>
-<td>1.6602434</td>
-<td>8.526694</td>
-<td>40</td>
-</tr>
-<tr>
-<td>AGTGG</td>
-<td>335</td>
-<td>1.654657</td>
-<td>6.1708827</td>
-<td>3</td>
-</tr>
-<tr>
-<td>TTCTG</td>
-<td>405</td>
-<td>1.6467704</td>
-<td>5.0850663</td>
-<td>49</td>
-</tr>
-<tr>
-<td>AGAAG</td>
-<td>475</td>
-<td>1.6460115</td>
-<td>5.1952276</td>
-<td>22</td>
-</tr>
-<tr>
-<td>ACTCC</td>
-<td>335</td>
-<td>1.6436341</td>
-<td>6.1297736</td>
-<td>10</td>
-</tr>
-<tr>
-<td>GGCTC</td>
-<td>245</td>
-<td>1.6268562</td>
-<td>8.304275</td>
-<td>46</td>
-</tr>
-<tr>
-<td>TGGCA</td>
-<td>330</td>
-<td>1.6263331</td>
-<td>8.637284</td>
-<td>40</td>
-</tr>
-<tr>
-<td>TCCTT</td>
-<td>400</td>
-<td>1.6228201</td>
-<td>6.0946</td>
-<td>40</td>
-</tr>
-<tr>
-<td>TCTGG</td>
-<td>310</td>
-<td>1.612598</td>
-<td>5.204428</td>
-<td>43</td>
-</tr>
-<tr>
-<td>GGGGA</td>
-<td>255</td>
-<td>1.6113497</td>
-<td>6.3157325</td>
-<td>7</td>
-</tr>
-<tr>
-<td>CTGCT</td>
-<td>310</td>
-<td>1.609009</td>
-<td>6.4845653</td>
-<td>3</td>
-</tr>
-<tr>
-<td>CCCAA</td>
-<td>345</td>
-<td>1.6036536</td>
-<td>5.8073177</td>
-<td>10</td>
-</tr>
-<tr>
-<td>TGGCC</td>
-<td>240</td>
-<td>1.5936551</td>
-<td>6.6434207</td>
-<td>49</td>
-</tr>
-<tr>
-<td>GTGCT</td>
-<td>305</td>
-<td>1.5865883</td>
-<td>5.220104</td>
-<td>50</td>
-</tr>
-<tr>
-<td>GCTTT</td>
-<td>390</td>
-<td>1.5857788</td>
-<td>6.1081944</td>
-<td>41</td>
-</tr>
-<tr>
-<td>CCACA</td>
-<td>335</td>
-<td>1.5571709</td>
-<td>5.813131</td>
-<td>30</td>
-</tr>
-<tr>
-<td>CCTTC</td>
-<td>300</td>
-<td>1.5536399</td>
-<td>6.4701333</td>
-<td>17</td>
-</tr>
-<tr>
-<td>CCACT</td>
-<td>315</td>
-<td>1.5455065</td>
-<td>6.135909</td>
-<td>32</td>
-</tr>
-<tr>
-<td>TCTTC</td>
-<td>380</td>
-<td>1.5416791</td>
-<td>5.0737495</td>
-<td>49</td>
-</tr>
-<tr>
-<td>GTTCA</td>
-<td>400</td>
-<td>1.5408814</td>
-<td>7.700401</td>
-<td>11</td>
-</tr>
-<tr>
-<td>AGGCA</td>
-<td>330</td>
-<td>1.5407803</td>
-<td>5.8332543</td>
-<td>6</td>
-</tr>
-<tr>
-<td>AAAAG</td>
-<td>600</td>
-<td>1.5396972</td>
-<td>5.782427</td>
-<td>41</td>
-</tr>
-<tr>
-<td>GCACA</td>
-<td>330</td>
-<td>1.5373511</td>
-<td>5.8202715</td>
-<td>18</td>
-</tr>
-<tr>
-<td>ATGCC</td>
-<td>305</td>
-<td>1.4997808</td>
-<td>12.286893</td>
-<td>22</td>
-</tr>
-<tr>
-<td>GAAGG</td>
-<td>320</td>
-<td>1.4974226</td>
-<td>5.8462653</td>
-<td>8</td>
-</tr>
-<tr>
-<td>GAGAG</td>
-<td>320</td>
-<td>1.4974226</td>
-<td>5.857981</td>
-<td>41</td>
-</tr>
-<tr>
-<td>TGTGC</td>
-<td>285</td>
-<td>1.4825499</td>
-<td>5.2044287</td>
-<td>29</td>
-</tr>
-<tr>
-<td>TTGGC</td>
-<td>285</td>
-<td>1.4825495</td>
-<td>5.199223</td>
-<td>15</td>
-</tr>
-<tr>
-<td>GGGAT</td>
-<td>300</td>
-<td>1.4817826</td>
-<td>7.40506</td>
-<td>21</td>
-</tr>
-<tr>
-<td>AGCTG</td>
-<td>300</td>
-<td>1.4784846</td>
-<td>6.1633124</td>
-<td>30</td>
-</tr>
-<tr>
-<td>AACAG</td>
-<td>425</td>
-<td>1.4694693</td>
-<td>5.1836653</td>
-<td>10</td>
-</tr>
-<tr>
-<td>GAGTG</td>
-<td>295</td>
-<td>1.4570862</td>
-<td>6.1770606</td>
-<td>33</td>
-</tr>
-<tr>
-<td>GGGAC</td>
-<td>230</td>
-<td>1.4501395</td>
-<td>6.3143044</td>
-<td>40</td>
-</tr>
-<tr>
-<td>GTGTT</td>
-<td>355</td>
-<td>1.4466851</td>
-<td>6.134112</td>
-<td>50</td>
-</tr>
-<tr>
-<td>TTTGG</td>
-<td>355</td>
-<td>1.4466851</td>
-<td>6.1095753</td>
-<td>3</td>
-</tr>
-<tr>
-<td>TCTTT</td>
-<td>455</td>
-<td>1.4461157</td>
-<td>5.5590916</td>
-<td>1</td>
-</tr>
-<tr>
-<td>GAGAT</td>
-<td>395</td>
-<td>1.4447913</td>
-<td>6.397646</td>
-<td>27</td>
-</tr>
-<tr>
-<td>CAAAA</td>
-<td>560</td>
-<td>1.4338523</td>
-<td>5.123362</td>
-<td>31</td>
-</tr>
-<tr>
-<td>GGTTC</td>
-<td>275</td>
-<td>1.4305303</td>
-<td>10.398446</td>
-<td>10</td>
-</tr>
-<tr>
-<td>CCCTT</td>
-<td>275</td>
-<td>1.4241698</td>
-<td>5.186479</td>
-<td>39</td>
-</tr>
-<tr>
-<td>CTGTT</td>
-<td>350</td>
-<td>1.4231348</td>
-<td>5.0799813</td>
-<td>10</td>
-</tr>
-<tr>
-<td>ATGGT</td>
-<td>365</td>
-<td>1.4091904</td>
-<td>6.7596393</td>
-<td>47</td>
-</tr>
-<tr>
-<td>TGTTG</td>
-<td>345</td>
-<td>1.4059336</td>
-<td>5.1015162</td>
-<td>40</td>
-</tr>
-<tr>
-<td>CTGTC</td>
-<td>270</td>
-<td>1.4013947</td>
-<td>5.198048</td>
-<td>39</td>
-</tr>
-<tr>
-<td>GAGAC</td>
-<td>300</td>
-<td>1.4007094</td>
-<td>5.856681</td>
-<td>50</td>
-</tr>
-<tr>
-<td>CTTCT</td>
-<td>345</td>
-<td>1.3996824</td>
-<td>7.1246448</td>
-<td>50</td>
-</tr>
-<tr>
-<td>GGCCC</td>
-<td>165</td>
-<td>1.398575</td>
-<td>6.353853</td>
-<td>2</td>
-</tr>
-<tr>
-<td>TGAGT</td>
-<td>360</td>
-<td>1.3898867</td>
-<td>5.7939773</td>
-<td>32</td>
-</tr>
-<tr>
-<td>GGCAC</td>
-<td>220</td>
-<td>1.3840029</td>
-<td>6.2876506</td>
-<td>17</td>
-</tr>
-<tr>
-<td>CCTTT</td>
-<td>340</td>
-<td>1.3793972</td>
-<td>5.068676</td>
-<td>8</td>
-</tr>
-<tr>
-<td>CCTTG</td>
-<td>265</td>
-<td>1.3754432</td>
-<td>5.187652</td>
-<td>18</td>
-</tr>
-<tr>
-<td>TTGAA</td>
-<td>475</td>
-<td>1.3580486</td>
-<td>6.4295163</td>
-<td>7</td>
-</tr>
-<tr>
-<td>GAGCG</td>
-<td>215</td>
-<td>1.3555653</td>
-<td>12.603353</td>
-<td>6</td>
-</tr>
-<tr>
-<td>AAGGA</td>
-<td>390</td>
-<td>1.3514621</td>
-<td>5.1952276</td>
-<td>44</td>
-</tr>
-<tr>
-<td>TTCTT</td>
-<td>420</td>
-<td>1.3348758</td>
-<td>7.941558</td>
-<td>4</td>
-</tr>
-<tr>
-<td>GGGGT</td>
-<td>200</td>
-<td>1.3339773</td>
-<td>8.333022</td>
-<td>45</td>
-</tr>
-<tr>
-<td>CAGAT</td>
-<td>365</td>
-<td>1.3320893</td>
-<td>5.4769697</td>
-<td>34</td>
-</tr>
-<tr>
-<td>CTTGG</td>
-<td>255</td>
-<td>1.3264918</td>
-<td>5.1992235</td>
-<td>18</td>
-</tr>
-<tr>
-<td>TGGTT</td>
-<td>320</td>
-<td>1.3040541</td>
-<td>5.091313</td>
-<td>25</td>
-</tr>
-<tr>
-<td>TTGGG</td>
-<td>250</td>
-<td>1.3033829</td>
-<td>6.5135255</td>
-<td>6</td>
-</tr>
-<tr>
-<td>CTGGT</td>
-<td>250</td>
-<td>1.3004823</td>
-<td>5.204428</td>
-<td>48</td>
-</tr>
-<tr>
-<td>GCTCC</td>
-<td>195</td>
-<td>1.2919631</td>
-<td>8.277508</td>
-<td>26</td>
-</tr>
-<tr>
-<td>TGATG</td>
-<td>330</td>
-<td>1.2740628</td>
-<td>5.7939773</td>
-<td>46</td>
-</tr>
-<tr>
-<td>TGTCC</td>
-<td>245</td>
-<td>1.2716361</td>
-<td>5.187652</td>
-<td>21</td>
-</tr>
-<tr>
-<td>GGCTT</td>
-<td>240</td>
-<td>1.2484628</td>
-<td>5.199223</td>
-<td>4</td>
-</tr>
-<tr>
-<td>GACAG</td>
-<td>265</td>
-<td>1.2372932</td>
-<td>5.833254</td>
-<td>27</td>
-</tr>
-<tr>
-<td>GGTGT</td>
-<td>235</td>
-<td>1.2251799</td>
-<td>5.21082</td>
-<td>27</td>
-</tr>
-<tr>
-<td>AATGC</td>
-<td>335</td>
-<td>1.2226022</td>
-<td>10.031068</td>
-<td>21</td>
-</tr>
-<tr>
-<td>TTTGC</td>
-<td>300</td>
-<td>1.2198299</td>
-<td>5.0799813</td>
-<td>9</td>
-</tr>
-<tr>
-<td>GTCCT</td>
-<td>230</td>
-<td>1.1937809</td>
-<td>5.1928453</td>
-<td>47</td>
-</tr>
-<tr>
-<td>GGGCC</td>
-<td>140</td>
-<td>1.1893166</td>
-<td>6.3744006</td>
-<td>43</td>
-</tr>
-<tr>
-<td>ATCCC</td>
-<td>240</td>
-<td>1.1775287</td>
-<td>6.135909</td>
-<td>43</td>
-</tr>
-<tr>
-<td>GCTCT</td>
-<td>225</td>
-<td>1.1678292</td>
-<td>7.789268</td>
-<td>47</td>
-</tr>
-<tr>
-<td>AGCCC</td>
-<td>185</td>
-<td>1.1612303</td>
-<td>6.2799363</td>
-<td>31</td>
-</tr>
-<tr>
-<td>GATCG</td>
-<td>235</td>
-<td>1.1581463</td>
-<td>6.1633124</td>
-<td>29</td>
-</tr>
-<tr>
-<td>ACCCT</td>
-<td>230</td>
-<td>1.128465</td>
-<td>6.129773</td>
-<td>10</td>
-</tr>
-<tr>
-<td>GTTGG</td>
-<td>215</td>
-<td>1.1209095</td>
-<td>5.2160373</td>
-<td>47</td>
-</tr>
-<tr>
-<td>AGCTC</td>
-<td>225</td>
-<td>1.1063956</td>
-<td>6.1434464</td>
-<td>25</td>
-</tr>
-<tr>
-<td>CCCAT</td>
-<td>225</td>
-<td>1.1039332</td>
-<td>6.129773</td>
-<td>21</td>
-</tr>
-<tr>
-<td>CGGAA</td>
-<td>235</td>
-<td>1.0972222</td>
-<td>9.333206</td>
-<td>1</td>
-</tr>
-<tr>
-<td>TCTTG</td>
-<td>265</td>
-<td>1.0775164</td>
-<td>5.0799813</td>
-<td>21</td>
-</tr>
-<tr>
-<td>ATGCA</td>
-<td>295</td>
-<td>1.0766199</td>
-<td>5.4714913</td>
-<td>37</td>
-</tr>
-<tr>
-<td>GCTTG</td>
-<td>205</td>
-<td>1.0663953</td>
-<td>5.199223</td>
-<td>2</td>
-</tr>
-<tr>
-<td>AGCGG</td>
-<td>165</td>
-<td>1.0403174</td>
-<td>12.603352</td>
-<td>7</td>
-</tr>
-<tr>
-<td>TTGCC</td>
-<td>200</td>
-<td>1.0380702</td>
-<td>5.1876516</td>
-<td>3</td>
-</tr>
-<tr>
-<td>AACCT</td>
-<td>285</td>
-<td>1.0378094</td>
-<td>5.4593143</td>
-<td>13</td>
-</tr>
-<tr>
-<td>AACCA</td>
-<td>300</td>
-<td>1.0349638</td>
-<td>5.1721287</td>
-<td>22</td>
-</tr>
-<tr>
-<td>CCGAG</td>
-<td>160</td>
-<td>1.0065476</td>
-<td>12.575301</td>
-<td>25</td>
-</tr>
-<tr>
-<td>GTTCC</td>
-<td>190</td>
-<td>0.9861668</td>
-<td>6.4845653</td>
-<td>27</td>
-</tr>
-<tr>
-<td>ACTCA</td>
-<td>270</td>
-<td>0.983188</td>
-<td>5.4593153</td>
-<td>11</td>
-</tr>
-<tr>
-<td>CTCAT</td>
-<td>255</td>
-<td>0.9801258</td>
-<td>5.7624474</td>
-<td>4</td>
-</tr>
-<tr>
-<td>GAACC</td>
-<td>210</td>
-<td>0.9783144</td>
-<td>5.820272</td>
-<td>25</td>
-</tr>
-<tr>
-<td>GGCGG</td>
-<td>110</td>
-<td>0.93654746</td>
-<td>10.637051</td>
-<td>44</td>
-</tr>
-<tr>
-<td>GCGGG</td>
-<td>110</td>
-<td>0.93654746</td>
-<td>6.3886194</td>
-<td>36</td>
-</tr>
-<tr>
-<td>ATCGG</td>
-<td>190</td>
-<td>0.93637353</td>
-<td>6.163312</td>
-<td>30</td>
-</tr>
-<tr>
-<td>GTCTG</td>
-<td>180</td>
-<td>0.9363471</td>
-<td>5.2096424</td>
-<td>41</td>
-</tr>
-<tr>
-<td>GCGGT</td>
-<td>140</td>
-<td>0.93170583</td>
-<td>13.303162</td>
-<td>8</td>
-</tr>
-<tr>
-<td>CGGGG</td>
-<td>105</td>
-<td>0.8939771</td>
-<td>6.3886194</td>
-<td>46</td>
-</tr>
-<tr>
-<td>GGGCG</td>
-<td>105</td>
-<td>0.8939771</td>
-<td>8.518159</td>
-<td>43</td>
-</tr>
-<tr>
-<td>TCGGA</td>
-<td>170</td>
-<td>0.83780795</td>
-<td>7.395975</td>
-<td>31</td>
-</tr>
-<tr>
-<td>CTTGT</td>
-<td>205</td>
-<td>0.83355045</td>
-<td>5.0850673</td>
-<td>38</td>
-</tr>
-<tr>
-<td>TGCCG</td>
-<td>125</td>
-<td>0.83002883</td>
-<td>14.93275</td>
-<td>23</td>
-</tr>
-<tr>
-<td>AGGCG</td>
-<td>125</td>
-<td>0.7881193</td>
-<td>6.3016763</td>
-<td>15</td>
-</tr>
-<tr>
-<td>CGGTT</td>
-<td>150</td>
-<td>0.78028923</td>
-<td>10.398446</td>
-<td>9</td>
-</tr>
-<tr>
-<td>GTGAC</td>
-<td>150</td>
-<td>0.7392424</td>
-<td>6.163313</td>
-<td>32</td>
-</tr>
-<tr>
-<td>GCCGA</td>
-<td>115</td>
-<td>0.723456</td>
-<td>12.575301</td>
-<td>24</td>
-</tr>
-<tr>
-<td>CCCGC</td>
-<td>85</td>
-<td>0.7188745</td>
-<td>6.3460584</td>
-<td>30</td>
-</tr>
-<tr>
-<td>CCCCG</td>
-<td>85</td>
-<td>0.7188745</td>
-<td>10.576764</td>
-<td>29</td>
-</tr>
-<tr>
-<td>CGAGA</td>
-<td>135</td>
-<td>0.6303192</td>
-<td>9.333206</td>
-<td>26</td>
-</tr>
-<tr>
-<td>CGGGA</td>
-<td>90</td>
-<td>0.5674459</td>
-<td>6.301676</td>
-<td>24</td>
-</tr>
-<tr>
-<td>CACGG</td>
-<td>85</td>
-<td>0.5347284</td>
-<td>6.2876506</td>
-<td>37</td>
-</tr>
-<tr>
-<td>CGCCT</td>
-<td>80</td>
-<td>0.5300361</td>
-<td>6.6286345</td>
-<td>30</td>
-</tr>
-<tr>
-<td>CCGCA</td>
-<td>75</td>
-<td>0.47076905</td>
-<td>6.2799363</td>
-<td>36</td>
-</tr>
-<tr>
-<td>CGTTG</td>
-<td>40</td>
-<td>0.20807713</td>
-<td>5.2044277</td>
-<td>46</td>
-</tr>
-</table>
-</div>
-</body></html><div class="module"><h2>Files created by FastQC</h2><table cellspacing="2" cellpadding="2">
-<tr><td><a href="1000gsample_fastqc.zip">1000gsample_fastqc.zip  (312.4 KB)</a></td></tr>
-<tr><td><a href="duplication_levels.png">duplication_levels.png  (14.5 KB)</a></td></tr>
-<tr><td><a href="fastqc_data.txt">fastqc_data.txt  (15.0 KB)</a></td></tr>
-<tr><td><a href="fastqc_report.html">fastqc_report.html  (25.3 KB)</a></td></tr>
-<tr><td><a href="kmer_profiles.png">kmer_profiles.png  (186.7 KB)</a></td></tr>
-<tr><td><a href="per_base_gc_content.png">per_base_gc_content.png  (12.1 KB)</a></td></tr>
-<tr><td><a href="per_base_n_content.png">per_base_n_content.png  (7.4 KB)</a></td></tr>
-<tr><td><a href="per_base_quality.png">per_base_quality.png  (9.6 KB)</a></td></tr>
-<tr><td><a href="per_base_sequence_content.png">per_base_sequence_content.png  (23.9 KB)</a></td></tr>
-<tr><td><a href="per_sequence_gc_content.png">per_sequence_gc_content.png  (29.6 KB)</a></td></tr>
-<tr><td><a href="per_sequence_quality.png">per_sequence_quality.png  (21.9 KB)</a></td></tr>
-<tr><td><a href="rgFastQCSBQEN1.log">rgFastQCSBQEN1.log  (1.2 KB)</a></td></tr>
-<tr><td><a href="sequence_length_distribution.png">sequence_length_distribution.png  (18.9 KB)</a></td></tr>
-<tr><td><a href="summary.txt">summary.txt  (509 B)</a></td></tr>
-</table>
-<a href="http://www.bioinformatics.bbsrc.ac.uk/projects/fastqc/">FastQC documentation and full attribution is here</a><br/><hr/>
-FastQC was run by Galaxy using the rgenetics rgFastQC wrapper - see http://rgenetics.org for details and licensing
-</div></div><div class="footer">Produced by <a href="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/">FastQC</a> (version 0.10.1)</div>
--- a/fastqc/test-data/fastqc_data.txt	Thu Jun 06 04:14:45 2013 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,558 +0,0 @@
-##FastQC	0.9.1
->>Basic Statistics	pass
-#Measure	Value	
-Filename	1000gsample.fastq	
-File type	Conventional base calls	
-Encoding	Sanger / Illumina 1.9	
-Total Sequences	5000	
-Sequence length	54	
-%GC	43	
->>END_MODULE
->>Per base sequence quality	warn
-#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
-1	28.9946	31.0	27.0	33.0	22.0	34.0
-2	28.486	30.0	26.0	32.0	21.0	33.0
-3	28.5272	30.0	26.0	32.0	21.0	34.0
-4	28.6252	30.0	26.0	32.0	22.0	33.0
-5	28.4804	30.0	26.0	32.0	21.0	33.0
-6	28.5128	30.0	26.0	32.0	22.0	33.0
-7	28.4102	30.0	26.0	32.0	21.0	33.0
-8	28.4674	30.0	26.0	32.0	22.0	33.0
-9	28.182	30.0	26.0	32.0	21.0	33.0
-10	28.0908	30.0	26.0	32.0	21.0	33.0
-11	28.1876	30.0	26.0	32.0	21.0	33.0
-12	28.1742	30.0	26.0	32.0	21.0	33.0
-13	27.923	30.0	25.0	32.0	20.0	33.0
-14	27.8984	29.0	25.0	32.0	21.0	33.0
-15	27.6112	29.0	25.0	32.0	20.0	33.0
-16	27.6638	29.0	25.0	32.0	20.0	33.0
-17	27.5734	29.0	25.0	32.0	20.0	33.0
-18	27.6348	29.0	25.0	32.0	20.0	33.0
-19	27.6526	29.0	25.0	32.0	20.0	33.0
-20	27.2716	29.0	24.0	32.0	19.0	33.0
-21	27.2642	29.0	25.0	31.0	19.0	33.0
-22	26.881	28.0	24.0	31.0	19.0	33.0
-23	26.8124	28.0	24.0	31.0	19.0	33.0
-24	26.8204	28.0	24.0	31.0	19.0	33.0
-25	26.6606	28.0	24.0	31.0	18.0	33.0
-26	26.3806	28.0	23.0	31.0	18.0	33.0
-27	25.947	28.0	23.0	31.0	17.0	33.0
-28	25.7446	27.0	22.0	31.0	16.0	33.0
-29	25.6856	27.0	22.0	31.0	16.0	33.0
-30	25.5228	27.0	22.0	31.0	16.0	33.0
-31	25.354	27.0	22.0	30.0	16.0	32.0
-32	25.1656	27.0	22.0	30.0	16.0	32.0
-33	25.0164	26.0	21.0	30.0	15.0	32.0
-34	24.75	26.0	21.0	30.0	15.0	32.0
-35	24.3926	26.0	21.0	30.0	15.0	32.0
-36	24.1122	25.0	20.0	30.0	14.0	32.0
-37	23.8612	25.0	20.0	29.0	13.0	32.0
-38	23.7544	25.0	20.0	29.0	13.0	32.0
-39	23.485	25.0	19.0	29.0	13.0	32.0
-40	23.1984	24.0	19.0	29.0	13.0	32.0
-41	23.0976	24.0	19.0	29.0	13.0	32.0
-42	22.9212	24.0	19.0	28.0	13.0	31.0
-43	22.5172	24.0	18.0	28.0	12.0	31.0
-44	22.3234	23.0	18.0	28.0	12.0	31.0
-45	22.1372	23.0	18.0	28.0	11.0	31.0
-46	22.2166	23.0	18.0	28.0	11.0	31.0
-47	22.075	23.0	18.0	28.0	11.0	31.0
-48	21.4592	22.0	17.0	27.0	11.0	31.0
-49	21.0954	22.0	16.0	27.0	10.0	30.0
-50	20.9356	22.0	16.0	27.0	10.0	30.0
-51	20.6152	21.0	15.0	27.0	9.0	30.0
-52	20.6588	21.0	16.0	27.0	9.0	30.0
-53	19.5852	20.0	14.0	25.0	9.0	29.0
-54	19.9424	21.0	14.0	26.0	7.0	30.0
->>END_MODULE
->>Per sequence quality scores	warn
-#Quality	Count
-8	4.0
-9	4.0
-10	2.0
-11	2.0
-12	4.0
-13	6.0
-14	4.0
-15	11.0
-16	20.0
-17	50.0
-18	98.0
-19	149.0
-20	210.0
-21	275.0
-22	367.0
-23	425.0
-24	518.0
-25	540.0
-26	539.0
-27	532.0
-28	468.0
-29	360.0
-30	234.0
-31	122.0
-32	51.0
-33	5.0
->>END_MODULE
->>Per base sequence content	pass
-#Base	G	A	T	C
-1	1075	1632	1296	997
-2	1202	1586	1327	885
-3	1079	1443	1471	1007
-4	1079	1414	1445	1062
-5	1058	1486	1416	1040
-6	1119	1462	1286	1133
-7	1067	1516	1412	1005
-8	1079	1453	1397	1071
-9	1015	1424	1429	1132
-10	1060	1542	1328	1070
-11	1057	1432	1364	1147
-12	1066	1444	1450	1040
-13	1018	1461	1447	1074
-14	1001	1460	1461	1078
-15	1010	1461	1419	1110
-16	1017	1469	1465	1049
-17	1030	1457	1425	1088
-18	1030	1396	1470	1104
-19	1083	1423	1429	1065
-20	1000	1462	1448	1090
-21	1086	1425	1409	1080
-22	1026	1544	1365	1065
-23	1036	1445	1486	1033
-24	1056	1431	1379	1134
-25	1055	1453	1458	1034
-26	1109	1419	1406	1064
-27	1067	1426	1438	1068
-28	967	1527	1373	1133
-29	1045	1456	1452	1046
-30	1055	1470	1372	1103
-31	1042	1402	1433	1123
-32	992	1418	1437	1151
-33	1104	1431	1363	1101
-34	1065	1464	1363	1107
-35	1054	1471	1411	1063
-36	1070	1433	1440	1056
-37	1044	1471	1426	1057
-38	1093	1451	1403	1052
-39	1096	1412	1352	1138
-40	1066	1425	1391	1118
-41	1083	1405	1380	1129
-42	1114	1401	1385	1097
-43	1062	1421	1391	1125
-44	1070	1449	1377	1103
-45	1093	1464	1337	1106
-46	1063	1377	1387	1173
-47	1081	1413	1402	1102
-48	1064	1422	1320	1194
-49	1052	1452	1359	1136
-50	1091	1407	1340	1160
-51	1051	1386	1400	1161
-52	1091	1507	1297	1104
-53	1058	1416	1402	1123
-54	1072	1345	1339	1221
->>END_MODULE
->>Per base GC content	pass
-#Base	%GC
-1	41.44
-2	41.74
-3	41.72
-4	42.82
-5	41.959999999999994
-6	45.04
-7	41.44
-8	43.0
-9	42.94
-10	42.6
-11	44.080000000000005
-12	42.120000000000005
-13	41.839999999999996
-14	41.58
-15	42.4
-16	41.32
-17	42.36
-18	42.68
-19	42.96
-20	41.8
-21	43.32
-22	41.82
-23	41.38
-24	43.8
-25	41.78
-26	43.47739095638256
-27	42.70854170834167
-28	42.0
-29	41.82836567313463
-30	43.16
-31	43.3
-32	42.87715086034414
-33	44.10882176435287
-34	43.44868973794759
-35	42.34846969393879
-36	42.528505701140226
-37	42.03681472589035
-38	42.90858171634327
-39	44.697879151660665
-40	43.68
-41	44.266559935961574
-42	44.24654792875725
-43	43.74874974994999
-44	43.468693738747746
-45	43.980000000000004
-46	44.72
-47	43.677470988395356
-48	45.16
-49	43.76875375075015
-50	45.038015206082434
-51	44.25770308123249
-52	43.908781756351274
-53	43.628725745149026
-54	46.071930882057465
->>END_MODULE
->>Per sequence GC content	warn
-#GC Content	Count
-0	3.0
-1	5.0
-2	7.0
-3	7.0
-4	7.0
-5	5.0
-6	2.0
-7	1.0
-8	1.5
-9	2.0
-10	1.5
-11	1.0
-12	2.5
-13	4.0
-14	4.0
-15	4.0
-16	5.0
-17	6.0
-18	11.0
-19	19.5
-20	23.0
-21	37.5
-22	52.0
-23	61.0
-24	70.0
-25	79.0
-26	88.0
-27	117.5
-28	147.0
-29	159.5
-30	172.0
-31	203.0
-32	243.0
-33	252.0
-34	290.0
-35	328.0
-36	330.0
-37	332.0
-38	332.5
-39	333.0
-40	342.0
-41	351.0
-42	343.5
-43	336.0
-44	318.5
-45	279.5
-46	258.0
-47	254.5
-48	251.0
-49	234.5
-50	218.0
-51	209.5
-52	201.0
-53	198.5
-54	196.0
-55	177.0
-56	162.5
-57	167.0
-58	147.0
-59	127.0
-60	106.5
-61	86.0
-62	85.0
-63	84.0
-64	61.5
-65	39.0
-66	42.5
-67	46.0
-68	34.0
-69	17.0
-70	12.0
-71	14.0
-72	16.0
-73	12.5
-74	9.0
-75	6.5
-76	4.0
-77	4.5
-78	5.0
-79	5.0
-80	5.0
-81	3.0
-82	1.0
-83	1.0
-84	1.0
-85	1.0
-86	1.0
-87	1.0
-88	1.0
-89	1.0
-90	2.0
-91	3.0
-92	2.5
-93	2.0
-94	2.0
-95	3.0
-96	4.0
-97	5.0
-98	6.0
-99	3.5
-100	1.0
->>END_MODULE
->>Per base N content	pass
-#Base	N-Count
-1	0.0
-2	0.0
-3	0.0
-4	0.0
-5	0.0
-6	0.0
-7	0.0
-8	0.0
-9	0.0
-10	0.0
-11	0.0
-12	0.0
-13	0.0
-14	0.0
-15	0.0
-16	0.0
-17	0.0
-18	0.0
-19	0.0
-20	0.0
-21	0.0
-22	0.0
-23	0.0
-24	0.0
-25	0.0
-26	0.04
-27	0.02
-28	0.0
-29	0.02
-30	0.0
-31	0.0
-32	0.04
-33	0.02
-34	0.02
-35	0.02
-36	0.02
-37	0.04
-38	0.02
-39	0.04
-40	0.0
-41	0.06
-42	0.06
-43	0.02
-44	0.02
-45	0.0
-46	0.0
-47	0.04
-48	0.0
-49	0.02
-50	0.04
-51	0.04
-52	0.02
-53	0.02
-54	0.45999999999999996
->>END_MODULE
->>Sequence Length Distribution	pass
-#Length	Count
-54	5000.0
->>END_MODULE
->>Sequence Duplication Levels	pass
-#Total Duplicate Percentage	0.66
-#Duplication Level	Relative count
-1	100.0
-2	0.08053150795248641
-3	0.040265753976243206
-4	0.0
-5	0.020132876988121603
-6	0.0
-7	0.040265753976243206
-8	0.0
-9	0.0
-10++	0.0
->>END_MODULE
->>Overrepresented sequences	warn
-#Sequence	Count	Percentage	Possible Source
-CGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	7	0.13999999999999999	Illumina Paired End PCR Primer 2 (96% over 33bp)
-CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC	7	0.13999999999999999	Illumina Paired End PCR Primer 2 (100% over 35bp)
->>END_MODULE
->>Kmer Content	fail
-#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
-CCCCC	1110	9.557241	23.193876	44
-AAAAA	2130	4.1300144	5.698024	7
-CTCCC	530	3.5749238	11.56272	11
-CCTCC	510	3.440021	11.56272	14
-CTGGG	465	3.1575248	8.314476	45
-TGGAA	785	2.929684	6.397646	17
-GGGGG	335	2.9167063	10.660779	6
-GAATG	775	2.8923633	10.053445	20
-CCCAG	450	2.8820548	7.8420706	22
-GTGTG	520	2.7661672	6.513526	23
-TGTGT	660	2.744307	6.109576	27
-GGGAG	425	2.7401958	6.315732	6
-ATGGA	730	2.7244196	6.397646	20
-GCTGG	395	2.6821985	6.651581	16
-GGAGG	410	2.643483	7.894665	7
-GGAAT	700	2.612457	7.3115954	19
-GCAGG	400	2.5732677	14.17877	16
-CCTGG	370	2.5068476	6.6367774	7
-CAGCC	380	2.4337354	6.273657	4
-TGGGA	480	2.419065	7.40506	20
-AATGG	645	2.4071925	5.4836965	18
-GCCTC	355	2.3998654	6.622006	2
-CCCTC	355	2.394524	8.259085	13
-CCAGC	370	2.3696895	6.2736564	14
-GGAAG	495	2.3634295	14.031037	2
-GGCTG	345	2.3426795	9.97737	24
-CAGGA	490	2.3343499	13.99981	17
-CCAGG	360	2.3107867	6.2876506	11
-CTGTG	435	2.3088553	9.09864	44
-GCCTG	340	2.3035896	8.295971	5
-TCCCA	460	2.3028264	6.1297736	9
-CTGCC	340	2.2984629	8.277508	10
-CAGCA	480	2.2816207	10.47649	14
-TTCCT	545	2.256056	7.0961456	1
-CTCCT	415	2.1929073	6.4701333	15
-TCCCC	325	2.1921701	6.6072683	28
-CAGGC	335	2.1503155	6.2876506	14
-CCCCA	335	2.1407545	6.259694	20
-TGGTG	400	2.127821	6.513526	9
-CCCCT	315	2.1247187	6.607268	12
-GGCAG	330	2.122946	6.301676	16
-CTCTG	400	2.1183603	5.187652	16
-TTCCA	540	2.1177678	6.7228537	28
-CAGAG	440	2.0961509	5.833255	28
-CCCTG	310	2.095657	6.622006	24
-AGGGA	435	2.0769534	5.846266	1
-CTCAG	410	2.0570977	6.143447	24
-CTTCC	385	2.034384	6.4701333	17
-AGCAG	425	2.0246909	10.499857	15
-AGGAA	570	2.015381	10.390455	18
-TCCTC	380	2.0079634	5.1761065	1
-TCAGC	400	2.0069244	12.286894	44
-AGAGC	420	2.0008712	10.499858	5
-TCCTG	375	1.9859626	6.4845653	8
-TCTCC	375	1.9815428	5.1761065	8
-CACCC	310	1.9809967	6.259694	9
-TGTGG	370	1.9682345	5.210821	4
-GATGG	390	1.9654902	6.1708827	1
-TGGCT	370	1.9638538	9.098641	45
-TCCCT	370	1.9551222	5.1761065	37
-CAGGG	300	1.9299511	6.3016763	21
-AAGAG	545	1.9269869	9.524584	4
-CAGAA	545	1.9226985	6.0476103	6
-CTGAG	380	1.9108309	6.15715	11
-TCTCT	460	1.9041945	5.068676	8
-GAGGC	295	1.897785	6.301676	22
-CCCAC	295	1.885142	6.259694	4
-CCTGC	275	1.8590509	9.93301	6
-CCTGT	350	1.8535651	6.4845653	6
-TTTCC	445	1.8421009	5.0686755	14
-TGCCT	345	1.8270856	5.187652	12
-CACAC	380	1.8022629	5.8073177	17
-CCTCT	340	1.7965988	7.7641597	2
-TTCCC	340	1.7965986	6.470133	18
-GAAGA	500	1.767878	7.792842	26
-CTGGC	260	1.7615684	6.636777	8
-TTCAG	440	1.7294377	9.6255	12
-CTCTC	325	1.717337	5.1761065	3
-GTGGT	320	1.7022567	5.2108207	24
-GGGTG	250	1.7013805	8.333022	28
-TGCTT	410	1.7010024	5.0799813	4
-CTTTG	405	1.6802584	5.0799813	2
-AGAAG	475	1.6794841	5.1952276	22
-ACTCC	330	1.6520276	6.1297736	10
-CTGCT	310	1.6417291	6.4845653	3
-GCCCC	190	1.6395733	6.339712	37
-AGTGG	325	1.6379085	6.1708827	3
-TGGCA	325	1.6342632	6.1571493	16
-GGCTC	240	1.626063	6.636776	25
-ACACA	460	1.6192161	5.1721287	14
-GCTTT	390	1.6180266	5.0799813	5
-TTCTG	390	1.6180266	5.0799813	3
-TCCTT	390	1.6144258	6.0824113	16
-CCCAA	335	1.588837	5.8073177	10
-GCACA	330	1.5686142	5.8202715	18
-GTTCA	395	1.5525635	7.700401	11
-TCTTC	375	1.5523325	5.068676	4
-AGGCA	325	1.5482932	5.8332543	6
-GGGGA	240	1.5474048	6.3157325	7
-CCTTC	290	1.5323931	6.4701333	17
-ATGCC	305	1.5302798	12.286893	22
-GAAGG	320	1.5278738	5.8462653	8
-GGGAT	295	1.4867171	7.40506	21
-TGTGC	280	1.4861598	5.199224	7
-AACAG	420	1.4817125	5.1836653	10
-TCTTT	455	1.4755235	5.5590916	1
-TTGGC	275	1.4596211	5.199223	15
-GAGAT	385	1.4368514	6.397646	27
-TTTGG	345	1.4345239	6.1095753	3
-GGTTC	270	1.4330826	10.398446	10
-CCTTG	265	1.4034137	5.187652	18
-CCCTT	265	1.4002901	5.176106	14
-CTGTT	335	1.3898433	5.0799813	10
-CCTTT	335	1.3867503	5.068676	8
-GGCAC	215	1.3800533	6.2876506	17
-TTGAA	465	1.3564935	6.4295163	7
-CTTGG	255	1.3534669	5.1992235	18
-GTGTT	325	1.3513632	5.091313	28
-GGCCC	155	1.3405302	6.353853	2
-TGGTT	320	1.330573	5.091313	25
-TTCTT	410	1.3295923	7.941558	4
-GGGGT	195	1.327077	8.333022	45
-AAGGA	375	1.3259085	5.1952276	44
-CAGAT	350	1.3033215	5.471493	10
-CTGGT	245	1.3003898	5.1992235	12
-TGTCC	245	1.2974956	5.187652	21
-GCTCC	190	1.2844352	8.277508	26
-GACAG	265	1.2624544	5.833254	27
-GAGCG	195	1.2544682	12.603353	6
-TTGGG	235	1.2500948	6.5135255	6
-AATGC	335	1.2474647	10.031068	21
-GGCTT	235	1.2473125	5.199223	4
-TTTGC	295	1.223892	5.0799813	9
-GGTGT	230	1.223497	5.21082	27
-GATCG	235	1.181698	6.1571493	45
-AGCTC	225	1.1288949	6.1434464	25
-ACCCT	225	1.1263824	6.129773	10
-CGGAA	235	1.119535	9.333206	1
-CCCAT	220	1.1013516	6.129773	21
-TCTTG	265	1.0994283	5.0799813	21
-ATGCA	295	1.0985136	5.4714913	37
-GCTTG	205	1.0880812	5.199223	2
-AGCGG	165	1.061473	12.603352	7
-AACCA	300	1.0560105	5.1721287	22
-AACCT	280	1.0403365	5.4593143	13
-CCGAG	160	1.0270164	12.575301	25
-TTGCC	190	1.0062209	5.1876516	3
-ACTCA	265	0.9846043	5.4593153	11
-CTCAT	250	0.98044825	5.7624474	4
-GTTCC	185	0.9797416	6.4845653	27
-GAACC	205	0.97444224	5.820272	25
-GGCGG	110	0.9555928	10.637051	44
-GCGGT	130	0.8827489	13.303162	8
-GCGGG	100	0.86872077	6.3822303	45
-TGCCG	125	0.846908	14.93275	23
-AGGCG	120	0.7719804	6.3016763	15
-CGGTT	140	0.74307984	10.398446	9
-GCCGA	115	0.738168	12.575301	24
-CGAGA	130	0.61931723	9.333206	26
-CGGGA	85	0.5468194	6.301676	24
-CACGG	85	0.54560244	6.2876506	37
->>END_MODULE
--- a/fastqc/test-data/fastqc_report.html	Thu Jun 06 04:14:45 2013 -0400
+++ b/fastqc/test-data/fastqc_report.html	Sat Jun 08 04:46:08 2013 -0400
@@ -1,108 +1,213 @@
 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Strict//EN">
 <html>
-<head><title>dataset_100.dat FastQC Report</title>
+<head><title>1000gsample.fastq FastQC Report</title>
 
 <style type="text/css">
 
-      body {    
-      font-family: sans-serif;   
-      color: #000000;   
-      background-color: #FFFFFF;
-      border: 0;
-      margin: 0;
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-      }
-      
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-      background-color: #EEEEEE;
-      border:0;
-      margin:0;
-      padding: 0.5em;
-      font-size: 200%;
-      font-weight: bold;
-      }
-
-      div.footer {
-      background-color: #EEEEEE;
-      border:0;
-      margin:0;
-      padding: 0.5em;
-      font-size: 100%;
-      font-weight: bold;
-      }
-
-      div.main {
-      margin-left: 2em;
-      margin-right: 2em;
-      }
-      
-      div.module {
-      padding-bottom:1.5em;
-      padding-top:1.5em;
-      }
-
-	  a {
-      color: #000080;
-      }
+ @media screen {
+  div.summary {
+    width: 18em;
+    position:fixed;
+    top: 3em;
+    margin:1em 0 0 1em;
+  }
+  
+  div.main {
+    display:block;
+    position:absolute;
+    overflow:auto;
+    height:auto;
+    width:auto;
+    top:4.5em;
+    bottom:2.3em;
+    left:18em;
+    right:0;
+    border-left: 1px solid #CCC;
+    padding:0 0 0 1em;
+    background-color: white;
+    z-index:1;
+  }
+  
+  div.header {
+    background-color: #EEE;
+    border:0;
+    margin:0;
+    padding: 0.5em;
+    font-size: 200%;
+    font-weight: bold;
+    position:fixed;
+    width:100%;
+    top:0;
+    left:0;
+    z-index:2;
+  }
 
-      a:hover {
-      color: #800000;
-      }
-      
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-      color: #800000;
-      padding-bottom: 0;
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-      }
-
-      th { 
-      text-align: center;
-      background-color: #000080;
-      color: #FFFFFF;
-      padding: 0.4em;
-      }      
+  div.footer {
+    background-color: #EEE;
+    border:0;
+    margin:0;
+	padding:0.5em;
+    height: 1.3em;
+	overflow:hidden;
+    font-size: 100%;
+    font-weight: bold;
+    position:fixed;
+    bottom:0;
+    width:100%;
+    z-index:2;
+  }
+  
+  img.indented {
+    margin-left: 3em;
+  }
+ }
+ 
+ @media print {
+	img {
+		max-width:100% !important;
+		page-break-inside: avoid;
+	}
+	h2, h3 {
+		page-break-after: avoid;
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+	div.header {
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+	
+ }
+ 
+ body {    
+  font-family: sans-serif;   
+  color: #000;   
+  background-color: #FFF;
+  border: 0;
+  margin: 0;
+  padding: 0;
+  }
+  
+  div.header {
+  border:0;
+  margin:0;
+  padding: 0.5em;
+  font-size: 200%;
+  font-weight: bold;
+  width:100%;
+  }    
+  
+  #header_title {
+  display:inline-block;
+  float:left;
+  clear:left;
+  }
+  #header_filename {
+  display:inline-block;
+  float:right;
+  clear:right;
+  font-size: 50%;
+  margin-right:2em;
+  text-align: right;
+  }
 
-      td { 
-      font-family: monospace; 
-      text-align: left;
-      background-color: #EEEEEE;
-      color: #000000;
-      padding: 0.4em;
-      }
+  div.header h3 {
+  font-size: 50%;
+  margin-bottom: 0;
+  }
+  
+  div.summary ul {
+  padding-left:0;
+  list-style-type:none;
+  }
+  
+  div.summary ul li img {
+  margin-bottom:-0.5em;
+  margin-top:0.5em;
+  }
+	  
+  div.main {
+  background-color: white;
+  }
+      
+  div.module {
+  padding-bottom:1.5em;
+  padding-top:1.5em;
+  }
+	  
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+  background-color: #EEE;
+  border:0;
+  margin:0;
+  padding: 0.5em;
+  font-size: 100%;
+  font-weight: bold;
+  width:100%;
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+
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+  a {
+  color: #000080;
+  }
 
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-      padding-top: 0;
-      margin-top: 0;
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-      }
+  a:hover {
+  color: #800000;
+  }
+      
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+  color: #800000;
+  padding-bottom: 0;
+  margin-bottom: 0;
+  clear:left;
+  }
 
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-      margin-left: 3em;
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+  table { 
+  margin-left: 3em;
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+  th { 
+  text-align: center;
+  background-color: #000080;
+  color: #FFF;
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+  td { 
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+  text-align: left;
+  background-color: #EEE;
+  color: #000;
+  padding: 0.4em;
+  }
 
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-      padding-top: 0;
-      margin-top: 0;
-      }
+  img {
+  padding-top: 0;
+  margin-top: 0;
+  border-top: 0;
+  }
+
+  
+  p {
+  padding-top: 0;
+  margin-top: 0;
+  }
+  
 </style>
 
 </head>
 <body>
-<div class="header"><img src="fastqc_icon.png">FastQC Report</div>
-<div class="main">
-<h3>Sun 29 May 2011</h3>
-<h3>dataset_100.dat</h3>
-<h2 id="summary">Summary</h2>
+<div class="header">
+<div id="header_title"><img src="fastqc_icon.png" alt="FastQC">FastQC Report</div>
+<div id="header_filename">
+Sat 8 Jun 2013<br />
+1000gsample.fastq
+</div>
+</div>
+<div class="summary">
+<h2>Summary</h2>
 <ul>
 <li><img src="tick.png" alt="[PASS]"> <a href="#M0">Basic Statistics</a></li>
 <li><img src="warning.png" alt="[WARNING]"> <a href="#M1">Per base sequence quality</a></li>
 <li><img src="warning.png" alt="[WARNING]"> <a href="#M2">Per sequence quality scores</a></li>
-<li><img src="tick.png" alt="[PASS]"> <a href="#M3">Per base sequence content</a></li>
+<li><img src="warning.png" alt="[WARNING]"> <a href="#M3">Per base sequence content</a></li>
 <li><img src="tick.png" alt="[PASS]"> <a href="#M4">Per base GC content</a></li>
 <li><img src="warning.png" alt="[WARNING]"> <a href="#M5">Per sequence GC content</a></li>
 <li><img src="tick.png" alt="[PASS]"> <a href="#M6">Per base N content</a></li>
@@ -111,7 +216,9 @@
 <li><img src="warning.png" alt="[WARNING]"> <a href="#M9">Overrepresented sequences</a></li>
 <li><img src="error.png" alt="[FAIL]"> <a href="#M10">Kmer Content</a></li>
 </ul>
-<div class="module"><h2 id="M0"><img src="tick.png" alt="[FAIL]"> Basic Statistics</h2>
+</div>
+<div class="main">
+<div class="module"><h2 id="M0"><img src="tick.png" alt="[OK]"> Basic Statistics</h2>
 <table>
 <tr>
 <th>Measure</th>
@@ -119,7 +226,7 @@
 </tr>
 <tr>
 <td>Filename</td>
-<td>dataset_100.dat</td>
+<td>1000gsample.fastq</td>
 </tr>
 <tr>
 <td>File type</td>
@@ -134,6 +241,10 @@
 <td>5000</td>
 </tr>
 <tr>
+<td>Filtered Sequences</td>
+<td>0</td>
+</tr>
+<tr>
 <td>Sequence length</td>
 <td>54</td>
 </tr>
@@ -142,32 +253,32 @@
 <td>43</td>
 </tr>
 </table>
-<p><a href="#summary">Back to summary</a></div>
-<div class="module"><h2 id="M1"><img src="warning.png" alt="[FAIL]"> Per base sequence quality</h2>
-<p><img class="indented" src="per_base_quality.png"></p>
-<p><a href="#summary">Back to summary</a></div>
-<div class="module"><h2 id="M2"><img src="warning.png" alt="[FAIL]"> Per sequence quality scores</h2>
-<p><img class="indented" src="per_sequence_quality.png"></p>
-<p><a href="#summary">Back to summary</a></div>
-<div class="module"><h2 id="M3"><img src="tick.png" alt="[FAIL]"> Per base sequence content</h2>
-<p><img class="indented" src="per_base_sequence_content.png"></p>
-<p><a href="#summary">Back to summary</a></div>
-<div class="module"><h2 id="M4"><img src="tick.png" alt="[FAIL]"> Per base GC content</h2>
-<p><img class="indented" src="per_base_gc_content.png"></p>
-<p><a href="#summary">Back to summary</a></div>
-<div class="module"><h2 id="M5"><img src="warning.png" alt="[FAIL]"> Per sequence GC content</h2>
-<p><img class="indented" src="per_sequence_gc_content.png"></p>
-<p><a href="#summary">Back to summary</a></div>
-<div class="module"><h2 id="M6"><img src="tick.png" alt="[FAIL]"> Per base N content</h2>
-<p><img class="indented" src="per_base_n_content.png"></p>
-<p><a href="#summary">Back to summary</a></div>
-<div class="module"><h2 id="M7"><img src="tick.png" alt="[FAIL]"> Sequence Length Distribution</h2>
-<p><img class="indented" src="sequence_length_distribution.png"></p>
-<p><a href="#summary">Back to summary</a></div>
-<div class="module"><h2 id="M8"><img src="tick.png" alt="[FAIL]"> Sequence Duplication Levels</h2>
-<p><img class="indented" src="duplication_levels.png"></p>
-<p><a href="#summary">Back to summary</a></div>
-<div class="module"><h2 id="M9"><img src="warning.png" alt="[FAIL]"> Overrepresented sequences</h2>
+</div>
+<div class="module"><h2 id="M1"><img src="warning.png" alt="[WARN]"> Per base sequence quality</h2>
+<p><img class="indented" src="per_base_quality.png" alt="Per base quality graph"></p>
+</div>
+<div class="module"><h2 id="M2"><img src="warning.png" alt="[WARN]"> Per sequence quality scores</h2>
+<p><img class="indented" src="per_sequence_quality.png" alt="Per Sequence quality graph"></p>
+</div>
+<div class="module"><h2 id="M3"><img src="warning.png" alt="[WARN]"> Per base sequence content</h2>
+<p><img class="indented" src="per_base_sequence_content.png" alt="Per base sequence content"></p>
+</div>
+<div class="module"><h2 id="M4"><img src="tick.png" alt="[OK]"> Per base GC content</h2>
+<p><img class="indented" src="per_base_gc_content.png" alt="Per base GC content graph"></p>
+</div>
+<div class="module"><h2 id="M5"><img src="warning.png" alt="[WARN]"> Per sequence GC content</h2>
+<p><img class="indented" src="per_sequence_gc_content.png" alt="Per sequence GC content graph"></p>
+</div>
+<div class="module"><h2 id="M6"><img src="tick.png" alt="[OK]"> Per base N content</h2>
+<p><img class="indented" src="per_base_n_content.png" alt="N content graph"></p>
+</div>
+<div class="module"><h2 id="M7"><img src="tick.png" alt="[OK]"> Sequence Length Distribution</h2>
+<p><img class="indented" src="sequence_length_distribution.png" alt="Sequence length distribution"></p>
+</div>
+<div class="module"><h2 id="M8"><img src="tick.png" alt="[OK]"> Sequence Duplication Levels</h2>
+<p><img class="indented" src="duplication_levels.png" alt="Duplication level graph"></p>
+</div>
+<div class="module"><h2 id="M9"><img src="warning.png" alt="[WARN]"> Overrepresented sequences</h2>
 <table>
 <tr>
 <th>Sequence</th>
@@ -188,9 +299,9 @@
 <td>Illumina Paired End PCR Primer 2 (100% over 35bp)</td>
 </tr>
 </table>
-<p><a href="#summary">Back to summary</a></div>
+</div>
 <div class="module"><h2 id="M10"><img src="error.png" alt="[FAIL]"> Kmer Content</h2>
-<p><img class="indented" src="kmer_profiles.png"></p>
+<p><img class="indented" src="kmer_profiles.png" alt="Kmer graph"></p>
 <table>
 <tr>
 <th>Sequence</th>
@@ -201,1149 +312,1499 @@
 </tr>
 <tr>
 <td>CCCCC</td>
-<td>1110</td>
-<td>9.557241</td>
-<td>23.193876</td>
-<td>44</td>
+<td>1180</td>
+<td>9.957459</td>
+<td>29.638031</td>
+<td>50</td>
 </tr>
 <tr>
 <td>AAAAA</td>
-<td>2130</td>
-<td>4.1300144</td>
-<td>5.698024</td>
-<td>7</td>
+<td>2175</td>
+<td>4.133217</td>
+<td>7.129659</td>
+<td>47</td>
 </tr>
 <tr>
 <td>CTCCC</td>
-<td>530</td>
-<td>3.5749238</td>
+<td>555</td>
+<td>3.668942</td>
 <td>11.56272</td>
 <td>11</td>
 </tr>
 <tr>
 <td>CCTCC</td>
-<td>510</td>
-<td>3.440021</td>
+<td>525</td>
+<td>3.4706206</td>
 <td>11.56272</td>
 <td>14</td>
 </tr>
 <tr>
 <td>CTGGG</td>
 <td>465</td>
-<td>3.1575248</td>
-<td>8.314476</td>
-<td>45</td>
+<td>3.0945942</td>
+<td>8.331139</td>
+<td>39</td>
+</tr>
+<tr>
+<td>GGGGG</td>
+<td>350</td>
+<td>2.9865708</td>
+<td>12.818572</td>
+<td>41</td>
 </tr>
 <tr>
 <td>TGGAA</td>
-<td>785</td>
-<td>2.929684</td>
+<td>800</td>
+<td>2.9261596</td>
 <td>6.397646</td>
 <td>17</td>
 </tr>
 <tr>
-<td>GGGGG</td>
-<td>335</td>
-<td>2.9167063</td>
-<td>10.660779</td>
-<td>6</td>
+<td>CCCAG</td>
+<td>455</td>
+<td>2.855999</td>
+<td>9.429343</td>
+<td>40</td>
 </tr>
 <tr>
 <td>GAATG</td>
 <td>775</td>
-<td>2.8923633</td>
+<td>2.8347175</td>
 <td>10.053445</td>
 <td>20</td>
 </tr>
 <tr>
-<td>CCCAG</td>
-<td>450</td>
-<td>2.8820548</td>
-<td>7.8420706</td>
-<td>22</td>
+<td>GTGTG</td>
+<td>530</td>
+<td>2.763172</td>
+<td>7.8240557</td>
+<td>33</td>
 </tr>
 <tr>
-<td>GTGTG</td>
-<td>520</td>
-<td>2.7661672</td>
-<td>6.513526</td>
-<td>23</td>
+<td>GGGAG</td>
+<td>435</td>
+<td>2.7487729</td>
+<td>6.3220544</td>
+<td>43</td>
 </tr>
 <tr>
 <td>TGTGT</td>
-<td>660</td>
-<td>2.744307</td>
+<td>670</td>
+<td>2.7303638</td>
 <td>6.109576</td>
 <td>27</td>
 </tr>
 <tr>
-<td>GGGAG</td>
-<td>425</td>
-<td>2.7401958</td>
-<td>6.315732</td>
-<td>6</td>
-</tr>
-<tr>
 <td>ATGGA</td>
-<td>730</td>
-<td>2.7244196</td>
+<td>735</td>
+<td>2.688409</td>
 <td>6.397646</td>
 <td>20</td>
 </tr>
 <tr>
-<td>GCTGG</td>
-<td>395</td>
-<td>2.6821985</td>
-<td>6.651581</td>
-<td>16</td>
-</tr>
-<tr>
-<td>GGAGG</td>
-<td>410</td>
-<td>2.643483</td>
-<td>7.894665</td>
-<td>7</td>
-</tr>
-<tr>
 <td>GGAAT</td>
-<td>700</td>
-<td>2.612457</td>
+<td>730</td>
+<td>2.6701207</td>
 <td>7.3115954</td>
 <td>19</td>
 </tr>
 <tr>
-<td>GCAGG</td>
+<td>GCTGG</td>
 <td>400</td>
-<td>2.5732677</td>
+<td>2.6620166</td>
+<td>8.322799</td>
+<td>31</td>
+</tr>
+<tr>
+<td>GGAGG</td>
+<td>420</td>
+<td>2.6539874</td>
+<td>7.9104857</td>
+<td>40</td>
+</tr>
+<tr>
+<td>GCAGG</td>
+<td>405</td>
+<td>2.5535064</td>
 <td>14.17877</td>
 <td>16</td>
 </tr>
 <tr>
 <td>CCTGG</td>
-<td>370</td>
-<td>2.5068476</td>
+<td>375</td>
+<td>2.4900866</td>
 <td>6.6367774</td>
 <td>7</td>
 </tr>
 <tr>
 <td>CAGCC</td>
-<td>380</td>
-<td>2.4337354</td>
-<td>6.273657</td>
-<td>4</td>
-</tr>
-<tr>
-<td>TGGGA</td>
-<td>480</td>
-<td>2.419065</td>
-<td>7.40506</td>
-<td>20</td>
-</tr>
-<tr>
-<td>AATGG</td>
-<td>645</td>
-<td>2.4071925</td>
-<td>5.4836965</td>
-<td>18</td>
-</tr>
-<tr>
-<td>GCCTC</td>
-<td>355</td>
-<td>2.3998654</td>
-<td>6.622006</td>
-<td>2</td>
-</tr>
-<tr>
-<td>CCCTC</td>
-<td>355</td>
-<td>2.394524</td>
-<td>8.259085</td>
-<td>13</td>
-</tr>
-<tr>
-<td>CCAGC</td>
-<td>370</td>
-<td>2.3696895</td>
-<td>6.2736564</td>
-<td>14</td>
-</tr>
-<tr>
-<td>GGAAG</td>
-<td>495</td>
-<td>2.3634295</td>
-<td>14.031037</td>
-<td>2</td>
+<td>390</td>
+<td>2.4479992</td>
+<td>6.279937</td>
+<td>38</td>
 </tr>
 <tr>
 <td>GGCTG</td>
-<td>345</td>
-<td>2.3426795</td>
+<td>365</td>
+<td>2.4290898</td>
 <td>9.97737</td>
 <td>24</td>
 </tr>
 <tr>
-<td>CAGGA</td>
+<td>TGGGA</td>
 <td>490</td>
-<td>2.3343499</td>
-<td>13.99981</td>
-<td>17</td>
+<td>2.4202447</td>
+<td>7.40506</td>
+<td>20</td>
 </tr>
 <tr>
-<td>CCAGG</td>
-<td>360</td>
-<td>2.3107867</td>
-<td>6.2876506</td>
-<td>11</td>
+<td>CCAGC</td>
+<td>385</td>
+<td>2.4166145</td>
+<td>6.286229</td>
+<td>41</td>
 </tr>
 <tr>
-<td>CTGTG</td>
-<td>435</td>
-<td>2.3088553</td>
-<td>9.09864</td>
-<td>44</td>
+<td>AATGG</td>
+<td>660</td>
+<td>2.4140818</td>
+<td>5.4836965</td>
+<td>18</td>
 </tr>
 <tr>
 <td>GCCTG</td>
-<td>340</td>
-<td>2.3035896</td>
+<td>360</td>
+<td>2.3904827</td>
 <td>8.295971</td>
 <td>5</td>
 </tr>
 <tr>
+<td>GCCTC</td>
+<td>360</td>
+<td>2.3851626</td>
+<td>6.6286345</td>
+<td>31</td>
+</tr>
+<tr>
+<td>CCCTC</td>
+<td>360</td>
+<td>2.379854</td>
+<td>8.267352</td>
+<td>34</td>
+</tr>
+<tr>
+<td>CTGTG</td>
+<td>450</td>
+<td>2.3408678</td>
+<td>9.09864</td>
+<td>44</td>
+</tr>
+<tr>
+<td>GGAAG</td>
+<td>500</td>
+<td>2.3397229</td>
+<td>14.031037</td>
+<td>2</td>
+</tr>
+<tr>
+<td>CAGCA</td>
+<td>500</td>
+<td>2.32932</td>
+<td>10.47649</td>
+<td>14</td>
+</tr>
+<tr>
+<td>CAGGA</td>
+<td>495</td>
+<td>2.3111706</td>
+<td>13.99981</td>
+<td>17</td>
+</tr>
+<tr>
 <td>TCCCA</td>
-<td>460</td>
-<td>2.3028264</td>
-<td>6.1297736</td>
-<td>9</td>
+<td>470</td>
+<td>2.305994</td>
+<td>7.370469</td>
+<td>39</td>
 </tr>
 <tr>
 <td>CTGCC</td>
-<td>340</td>
-<td>2.2984629</td>
+<td>345</td>
+<td>2.285781</td>
 <td>8.277508</td>
 <td>10</td>
 </tr>
 <tr>
-<td>CAGCA</td>
-<td>480</td>
-<td>2.2816207</td>
-<td>10.47649</td>
-<td>14</td>
+<td>GGTGG</td>
+<td>340</td>
+<td>2.2677608</td>
+<td>5.009832</td>
+<td>42</td>
+</tr>
+<tr>
+<td>CCAGG</td>
+<td>360</td>
+<td>2.264732</td>
+<td>6.300251</td>
+<td>41</td>
 </tr>
 <tr>
 <td>TTCCT</td>
-<td>545</td>
-<td>2.256056</td>
+<td>555</td>
+<td>2.2516627</td>
 <td>7.0961456</td>
 <td>1</td>
 </tr>
 <tr>
+<td>TCCCC</td>
+<td>335</td>
+<td>2.2145865</td>
+<td>8.267353</td>
+<td>29</td>
+</tr>
+<tr>
+<td>CAGGC</td>
+<td>350</td>
+<td>2.2018228</td>
+<td>6.300251</td>
+<td>42</td>
+</tr>
+<tr>
 <td>CTCCT</td>
-<td>415</td>
-<td>2.1929073</td>
+<td>425</td>
+<td>2.2009897</td>
 <td>6.4701333</td>
 <td>15</td>
 </tr>
 <tr>
-<td>TCCCC</td>
-<td>325</td>
-<td>2.1921701</td>
-<td>6.6072683</td>
-<td>28</td>
-</tr>
-<tr>
-<td>CAGGC</td>
-<td>335</td>
-<td>2.1503155</td>
-<td>6.2876506</td>
-<td>14</td>
+<td>GGCAG</td>
+<td>340</td>
+<td>2.1436844</td>
+<td>6.301676</td>
+<td>16</td>
 </tr>
 <tr>
 <td>CCCCA</td>
-<td>335</td>
-<td>2.1407545</td>
-<td>6.259694</td>
-<td>20</td>
+<td>340</td>
+<td>2.129403</td>
+<td>6.26596</td>
+<td>31</td>
+</tr>
+<tr>
+<td>CTCTG</td>
+<td>410</td>
+<td>2.1280441</td>
+<td>5.1928453</td>
+<td>48</td>
 </tr>
 <tr>
 <td>TGGTG</td>
-<td>400</td>
-<td>2.127821</td>
-<td>6.513526</td>
-<td>9</td>
+<td>405</td>
+<td>2.1114805</td>
+<td>6.520046</td>
+<td>33</td>
+</tr>
+<tr>
+<td>TTCCA</td>
+<td>545</td>
+<td>2.094778</td>
+<td>6.7295837</td>
+<td>33</td>
 </tr>
 <tr>
 <td>CCCCT</td>
 <td>315</td>
-<td>2.1247187</td>
+<td>2.0823722</td>
 <td>6.607268</td>
 <td>12</td>
 </tr>
 <tr>
-<td>GGCAG</td>
-<td>330</td>
-<td>2.122946</td>
-<td>6.301676</td>
-<td>16</td>
+<td>CTCAG</td>
+<td>420</td>
+<td>2.0652719</td>
+<td>6.149596</td>
+<td>46</td>
 </tr>
 <tr>
-<td>CTCTG</td>
-<td>400</td>
-<td>2.1183603</td>
-<td>5.187652</td>
-<td>16</td>
-</tr>
-<tr>
-<td>TTCCA</td>
-<td>540</td>
-<td>2.1177678</td>
-<td>6.7228537</td>
-<td>28</td>
+<td>AGGGA</td>
+<td>440</td>
+<td>2.0589561</td>
+<td>7.0225415</td>
+<td>31</td>
 </tr>
 <tr>
 <td>CAGAG</td>
 <td>440</td>
-<td>2.0961509</td>
-<td>5.833255</td>
-<td>28</td>
+<td>2.054374</td>
+<td>5.8390937</td>
+<td>38</td>
+</tr>
+<tr>
+<td>AGCAG</td>
+<td>440</td>
+<td>2.0543735</td>
+<td>10.499857</td>
+<td>15</td>
 </tr>
 <tr>
 <td>CCCTG</td>
 <td>310</td>
-<td>2.095657</td>
+<td>2.05389</td>
 <td>6.622006</td>
 <td>24</td>
 </tr>
 <tr>
-<td>AGGGA</td>
-<td>435</td>
-<td>2.0769534</td>
-<td>5.846266</td>
-<td>1</td>
-</tr>
-<tr>
-<td>CTCAG</td>
-<td>410</td>
-<td>2.0570977</td>
-<td>6.143447</td>
-<td>24</td>
-</tr>
-<tr>
 <td>CTTCC</td>
-<td>385</td>
-<td>2.034384</td>
+<td>390</td>
+<td>2.0197318</td>
 <td>6.4701333</td>
 <td>17</td>
 </tr>
 <tr>
-<td>AGCAG</td>
-<td>425</td>
-<td>2.0246909</td>
-<td>10.499857</td>
-<td>15</td>
-</tr>
-<tr>
 <td>AGGAA</td>
-<td>570</td>
-<td>2.015381</td>
+<td>580</td>
+<td>2.0098667</td>
 <td>10.390455</td>
 <td>18</td>
 </tr>
 <tr>
-<td>TCCTC</td>
-<td>380</td>
-<td>2.0079634</td>
-<td>5.1761065</td>
-<td>1</td>
-</tr>
-<tr>
-<td>TCAGC</td>
-<td>400</td>
-<td>2.0069244</td>
-<td>12.286894</td>
-<td>44</td>
-</tr>
-<tr>
 <td>AGAGC</td>
-<td>420</td>
-<td>2.0008712</td>
+<td>430</td>
+<td>2.0076835</td>
 <td>10.499858</td>
 <td>5</td>
 </tr>
 <tr>
+<td>TCTCC</td>
+<td>385</td>
+<td>1.9938378</td>
+<td>5.181288</td>
+<td>29</td>
+</tr>
+<tr>
+<td>TCCTC</td>
+<td>385</td>
+<td>1.9938378</td>
+<td>5.181288</td>
+<td>48</td>
+</tr>
+<tr>
+<td>TCAGC</td>
+<td>405</td>
+<td>1.9915122</td>
+<td>12.286894</td>
+<td>44</td>
+</tr>
+<tr>
+<td>TGCTG</td>
+<td>380</td>
+<td>1.9767327</td>
+<td>6.5055346</td>
+<td>47</td>
+</tr>
+<tr>
+<td>CACCC</td>
+<td>315</td>
+<td>1.9728295</td>
+<td>6.259694</td>
+<td>9</td>
+</tr>
+<tr>
 <td>TCCTG</td>
-<td>375</td>
-<td>1.9859626</td>
+<td>380</td>
+<td>1.9723336</td>
 <td>6.4845653</td>
 <td>8</td>
 </tr>
 <tr>
-<td>TCTCC</td>
-<td>375</td>
-<td>1.9815428</td>
-<td>5.1761065</td>
-<td>8</td>
-</tr>
-<tr>
-<td>CACCC</td>
+<td>CAGGG</td>
 <td>310</td>
-<td>1.9809967</td>
-<td>6.259694</td>
-<td>9</td>
-</tr>
-<tr>
-<td>TGTGG</td>
-<td>370</td>
-<td>1.9682345</td>
-<td>5.210821</td>
-<td>4</td>
+<td>1.954536</td>
+<td>6.3016763</td>
+<td>21</td>
 </tr>
 <tr>
 <td>GATGG</td>
-<td>390</td>
-<td>1.9654902</td>
+<td>395</td>
+<td>1.9510134</td>
 <td>6.1708827</td>
 <td>1</td>
 </tr>
 <tr>
 <td>TGGCT</td>
-<td>370</td>
-<td>1.9638538</td>
+<td>375</td>
+<td>1.9507233</td>
 <td>9.098641</td>
 <td>45</td>
 </tr>
 <tr>
-<td>TCCCT</td>
-<td>370</td>
-<td>1.9551222</td>
-<td>5.1761065</td>
-<td>37</td>
-</tr>
-<tr>
-<td>CAGGG</td>
-<td>300</td>
-<td>1.9299511</td>
-<td>6.3016763</td>
-<td>21</td>
-</tr>
-<tr>
 <td>AAGAG</td>
-<td>545</td>
-<td>1.9269869</td>
+<td>560</td>
+<td>1.9405607</td>
 <td>9.524584</td>
 <td>4</td>
 </tr>
 <tr>
+<td>TGTGG</td>
+<td>370</td>
+<td>1.929007</td>
+<td>6.5200467</td>
+<td>30</td>
+</tr>
+<tr>
+<td>CTGAG</td>
+<td>390</td>
+<td>1.9220302</td>
+<td>6.163313</td>
+<td>35</td>
+</tr>
+<tr>
+<td>CCTGT</td>
+<td>370</td>
+<td>1.9204301</td>
+<td>6.4845653</td>
+<td>6</td>
+</tr>
+<tr>
 <td>CAGAA</td>
-<td>545</td>
-<td>1.9226985</td>
+<td>555</td>
+<td>1.9189543</td>
 <td>6.0476103</td>
 <td>6</td>
 </tr>
 <tr>
-<td>CTGAG</td>
+<td>TCCCT</td>
+<td>370</td>
+<td>1.9161558</td>
+<td>6.4766097</td>
+<td>33</td>
+</tr>
+<tr>
+<td>CCCAC</td>
+<td>305</td>
+<td>1.9101999</td>
+<td>6.259694</td>
+<td>4</td>
+</tr>
+<tr>
+<td>CACCA</td>
+<td>405</td>
+<td>1.8825499</td>
+<td>6.9757566</td>
+<td>33</td>
+</tr>
+<tr>
+<td>AAAGA</td>
+<td>730</td>
+<td>1.8732982</td>
+<td>5.1399345</td>
+<td>42</td>
+</tr>
+<tr>
+<td>CAGTG</td>
 <td>380</td>
-<td>1.9108309</td>
-<td>6.15715</td>
-<td>11</td>
+<td>1.8727474</td>
+<td>6.163313</td>
+<td>30</td>
+</tr>
+<tr>
+<td>GAAGA</td>
+<td>540</td>
+<td>1.8712552</td>
+<td>7.792842</td>
+<td>26</td>
 </tr>
 <tr>
 <td>TCTCT</td>
 <td>460</td>
-<td>1.9041945</td>
+<td>1.8662432</td>
 <td>5.068676</td>
 <td>8</td>
 </tr>
 <tr>
+<td>TTTCC</td>
+<td>460</td>
+<td>1.8662429</td>
+<td>5.073749</td>
+<td>38</td>
+</tr>
+<tr>
 <td>GAGGC</td>
 <td>295</td>
-<td>1.897785</td>
+<td>1.8599615</td>
 <td>6.301676</td>
 <td>22</td>
 </tr>
 <tr>
-<td>CCCAC</td>
-<td>295</td>
-<td>1.885142</td>
-<td>6.259694</td>
-<td>4</td>
+<td>TCTGT</td>
+<td>455</td>
+<td>1.8500755</td>
+<td>5.0850673</td>
+<td>49</td>
 </tr>
 <tr>
 <td>CCTGC</td>
 <td>275</td>
-<td>1.8590509</td>
+<td>1.8219992</td>
 <td>9.93301</td>
 <td>6</td>
 </tr>
 <tr>
-<td>CCTGT</td>
+<td>CCTCT</td>
 <td>350</td>
-<td>1.8535651</td>
-<td>6.4845653</td>
-<td>6</td>
-</tr>
-<tr>
-<td>TTTCC</td>
-<td>445</td>
-<td>1.8421009</td>
-<td>5.0686755</td>
-<td>14</td>
+<td>1.8125799</td>
+<td>7.7641597</td>
+<td>2</td>
 </tr>
 <tr>
 <td>TGCCT</td>
 <td>345</td>
-<td>1.8270856</td>
+<td>1.7906713</td>
 <td>5.187652</td>
 <td>12</td>
 </tr>
 <tr>
-<td>CACAC</td>
-<td>380</td>
-<td>1.8022629</td>
-<td>5.8073177</td>
-<td>17</td>
-</tr>
-<tr>
-<td>CCTCT</td>
-<td>340</td>
-<td>1.7965988</td>
-<td>7.7641597</td>
-<td>2</td>
-</tr>
-<tr>
 <td>TTCCC</td>
-<td>340</td>
-<td>1.7965986</td>
+<td>345</td>
+<td>1.7866857</td>
 <td>6.470133</td>
 <td>18</td>
 </tr>
 <tr>
-<td>GAAGA</td>
-<td>500</td>
-<td>1.767878</td>
-<td>7.792842</td>
-<td>26</td>
+<td>GAGGG</td>
+<td>280</td>
+<td>1.769325</td>
+<td>6.3283887</td>
+<td>41</td>
+</tr>
+<tr>
+<td>CACAC</td>
+<td>380</td>
+<td>1.7663432</td>
+<td>5.813131</td>
+<td>33</td>
+</tr>
+<tr>
+<td>TCTGC</td>
+<td>340</td>
+<td>1.7647195</td>
+<td>5.1980486</td>
+<td>42</td>
 </tr>
 <tr>
 <td>CTGGC</td>
-<td>260</td>
-<td>1.7615684</td>
-<td>6.636777</td>
-<td>8</td>
+<td>265</td>
+<td>1.7596608</td>
+<td>6.6434207</td>
+<td>43</td>
 </tr>
 <tr>
 <td>TTCAG</td>
-<td>440</td>
-<td>1.7294377</td>
+<td>455</td>
+<td>1.7527524</td>
 <td>9.6255</td>
 <td>12</td>
 </tr>
 <tr>
+<td>AGCCA</td>
+<td>375</td>
+<td>1.74699</td>
+<td>5.8319354</td>
+<td>39</td>
+</tr>
+<tr>
 <td>CTCTC</td>
-<td>325</td>
-<td>1.717337</td>
+<td>335</td>
+<td>1.7348979</td>
 <td>5.1761065</td>
 <td>3</td>
 </tr>
 <tr>
+<td>GGGTG</td>
+<td>260</td>
+<td>1.7341703</td>
+<td>8.333022</td>
+<td>28</td>
+</tr>
+<tr>
+<td>TGGGG</td>
+<td>260</td>
+<td>1.7341703</td>
+<td>8.349721</td>
+<td>39</td>
+</tr>
+<tr>
+<td>GTGGG</td>
+<td>255</td>
+<td>1.7008208</td>
+<td>6.6730905</td>
+<td>31</td>
+</tr>
+<tr>
+<td>GGCCA</td>
+<td>270</td>
+<td>1.698549</td>
+<td>6.293945</td>
+<td>43</td>
+</tr>
+<tr>
+<td>GCCCC</td>
+<td>200</td>
+<td>1.6914694</td>
+<td>6.3460584</td>
+<td>32</td>
+</tr>
+<tr>
+<td>CTTTG</td>
+<td>415</td>
+<td>1.6874313</td>
+<td>5.0799813</td>
+<td>2</td>
+</tr>
+<tr>
+<td>ACACA</td>
+<td>485</td>
+<td>1.6731915</td>
+<td>5.1721287</td>
+<td>14</td>
+</tr>
+<tr>
 <td>GTGGT</td>
 <td>320</td>
-<td>1.7022567</td>
-<td>5.2108207</td>
-<td>24</td>
+<td>1.6683302</td>
+<td>5.216037</td>
+<td>31</td>
 </tr>
 <tr>
-<td>GGGTG</td>
-<td>250</td>
-<td>1.7013805</td>
-<td>8.333022</td>
-<td>28</td>
+<td>CTCAC</td>
+<td>340</td>
+<td>1.6681659</td>
+<td>7.363092</td>
+<td>31</td>
 </tr>
 <tr>
 <td>TGCTT</td>
 <td>410</td>
-<td>1.7010024</td>
-<td>5.0799813</td>
-<td>4</td>
+<td>1.6671008</td>
+<td>5.090162</td>
+<td>40</td>
+</tr>
+<tr>
+<td>GGGGC</td>
+<td>195</td>
+<td>1.6602434</td>
+<td>8.526694</td>
+<td>40</td>
 </tr>
 <tr>
-<td>CTTTG</td>
+<td>AGTGG</td>
+<td>335</td>
+<td>1.654657</td>
+<td>6.1708827</td>
+<td>3</td>
+</tr>
+<tr>
+<td>TTCTG</td>
 <td>405</td>
-<td>1.6802584</td>
-<td>5.0799813</td>
-<td>2</td>
+<td>1.6467704</td>
+<td>5.0850663</td>
+<td>49</td>
 </tr>
 <tr>
 <td>AGAAG</td>
 <td>475</td>
-<td>1.6794841</td>
+<td>1.6460115</td>
 <td>5.1952276</td>
 <td>22</td>
 </tr>
 <tr>
 <td>ACTCC</td>
-<td>330</td>
-<td>1.6520276</td>
+<td>335</td>
+<td>1.6436341</td>
 <td>6.1297736</td>
 <td>10</td>
 </tr>
 <tr>
+<td>GGCTC</td>
+<td>245</td>
+<td>1.6268562</td>
+<td>8.304275</td>
+<td>46</td>
+</tr>
+<tr>
+<td>TGGCA</td>
+<td>330</td>
+<td>1.6263331</td>
+<td>8.637284</td>
+<td>40</td>
+</tr>
+<tr>
+<td>TCCTT</td>
+<td>400</td>
+<td>1.6228201</td>
+<td>6.0946</td>
+<td>40</td>
+</tr>
+<tr>
+<td>TCTGG</td>
+<td>310</td>
+<td>1.612598</td>
+<td>5.204428</td>
+<td>43</td>
+</tr>
+<tr>
+<td>GGGGA</td>
+<td>255</td>
+<td>1.6113497</td>
+<td>6.3157325</td>
+<td>7</td>
+</tr>
+<tr>
 <td>CTGCT</td>
 <td>310</td>
-<td>1.6417291</td>
+<td>1.609009</td>
 <td>6.4845653</td>
 <td>3</td>
 </tr>
 <tr>
-<td>GCCCC</td>
-<td>190</td>
-<td>1.6395733</td>
-<td>6.339712</td>
-<td>37</td>
-</tr>
-<tr>
-<td>AGTGG</td>
-<td>325</td>
-<td>1.6379085</td>
-<td>6.1708827</td>
-<td>3</td>
+<td>CCCAA</td>
+<td>345</td>
+<td>1.6036536</td>
+<td>5.8073177</td>
+<td>10</td>
 </tr>
 <tr>
-<td>TGGCA</td>
-<td>325</td>
-<td>1.6342632</td>
-<td>6.1571493</td>
-<td>16</td>
+<td>TGGCC</td>
+<td>240</td>
+<td>1.5936551</td>
+<td>6.6434207</td>
+<td>49</td>
 </tr>
 <tr>
-<td>GGCTC</td>
-<td>240</td>
-<td>1.626063</td>
-<td>6.636776</td>
-<td>25</td>
-</tr>
-<tr>
-<td>ACACA</td>
-<td>460</td>
-<td>1.6192161</td>
-<td>5.1721287</td>
-<td>14</td>
+<td>GTGCT</td>
+<td>305</td>
+<td>1.5865883</td>
+<td>5.220104</td>
+<td>50</td>
 </tr>
 <tr>
 <td>GCTTT</td>
 <td>390</td>
-<td>1.6180266</td>
-<td>5.0799813</td>
-<td>5</td>
+<td>1.5857788</td>
+<td>6.1081944</td>
+<td>41</td>
+</tr>
+<tr>
+<td>CCACA</td>
+<td>335</td>
+<td>1.5571709</td>
+<td>5.813131</td>
+<td>30</td>
 </tr>
 <tr>
-<td>TTCTG</td>
-<td>390</td>
-<td>1.6180266</td>
-<td>5.0799813</td>
-<td>3</td>
+<td>CCTTC</td>
+<td>300</td>
+<td>1.5536399</td>
+<td>6.4701333</td>
+<td>17</td>
+</tr>
+<tr>
+<td>CCACT</td>
+<td>315</td>
+<td>1.5455065</td>
+<td>6.135909</td>
+<td>32</td>
 </tr>
 <tr>
-<td>TCCTT</td>
-<td>390</td>
-<td>1.6144258</td>
-<td>6.0824113</td>
-<td>16</td>
+<td>TCTTC</td>
+<td>380</td>
+<td>1.5416791</td>
+<td>5.0737495</td>
+<td>49</td>
 </tr>
 <tr>
-<td>CCCAA</td>
-<td>335</td>
-<td>1.588837</td>
-<td>5.8073177</td>
-<td>10</td>
+<td>GTTCA</td>
+<td>400</td>
+<td>1.5408814</td>
+<td>7.700401</td>
+<td>11</td>
+</tr>
+<tr>
+<td>AGGCA</td>
+<td>330</td>
+<td>1.5407803</td>
+<td>5.8332543</td>
+<td>6</td>
+</tr>
+<tr>
+<td>AAAAG</td>
+<td>600</td>
+<td>1.5396972</td>
+<td>5.782427</td>
+<td>41</td>
 </tr>
 <tr>
 <td>GCACA</td>
 <td>330</td>
-<td>1.5686142</td>
+<td>1.5373511</td>
 <td>5.8202715</td>
 <td>18</td>
 </tr>
 <tr>
-<td>GTTCA</td>
-<td>395</td>
-<td>1.5525635</td>
-<td>7.700401</td>
-<td>11</td>
-</tr>
-<tr>
-<td>TCTTC</td>
-<td>375</td>
-<td>1.5523325</td>
-<td>5.068676</td>
-<td>4</td>
-</tr>
-<tr>
-<td>AGGCA</td>
-<td>325</td>
-<td>1.5482932</td>
-<td>5.8332543</td>
-<td>6</td>
-</tr>
-<tr>
-<td>GGGGA</td>
-<td>240</td>
-<td>1.5474048</td>
-<td>6.3157325</td>
-<td>7</td>
-</tr>
-<tr>
-<td>CCTTC</td>
-<td>290</td>
-<td>1.5323931</td>
-<td>6.4701333</td>
-<td>17</td>
-</tr>
-<tr>
 <td>ATGCC</td>
 <td>305</td>
-<td>1.5302798</td>
+<td>1.4997808</td>
 <td>12.286893</td>
 <td>22</td>
 </tr>
 <tr>
 <td>GAAGG</td>
 <td>320</td>
-<td>1.5278738</td>
+<td>1.4974226</td>
 <td>5.8462653</td>
 <td>8</td>
 </tr>
 <tr>
+<td>GAGAG</td>
+<td>320</td>
+<td>1.4974226</td>
+<td>5.857981</td>
+<td>41</td>
+</tr>
+<tr>
+<td>TGTGC</td>
+<td>285</td>
+<td>1.4825499</td>
+<td>5.2044287</td>
+<td>29</td>
+</tr>
+<tr>
+<td>TTGGC</td>
+<td>285</td>
+<td>1.4825495</td>
+<td>5.199223</td>
+<td>15</td>
+</tr>
+<tr>
 <td>GGGAT</td>
-<td>295</td>
-<td>1.4867171</td>
+<td>300</td>
+<td>1.4817826</td>
 <td>7.40506</td>
 <td>21</td>
 </tr>
 <tr>
-<td>TGTGC</td>
-<td>280</td>
-<td>1.4861598</td>
-<td>5.199224</td>
-<td>7</td>
+<td>AGCTG</td>
+<td>300</td>
+<td>1.4784846</td>
+<td>6.1633124</td>
+<td>30</td>
 </tr>
 <tr>
 <td>AACAG</td>
-<td>420</td>
-<td>1.4817125</td>
+<td>425</td>
+<td>1.4694693</td>
 <td>5.1836653</td>
 <td>10</td>
 </tr>
 <tr>
+<td>GAGTG</td>
+<td>295</td>
+<td>1.4570862</td>
+<td>6.1770606</td>
+<td>33</td>
+</tr>
+<tr>
+<td>GGGAC</td>
+<td>230</td>
+<td>1.4501395</td>
+<td>6.3143044</td>
+<td>40</td>
+</tr>
+<tr>
+<td>GTGTT</td>
+<td>355</td>
+<td>1.4466851</td>
+<td>6.134112</td>
+<td>50</td>
+</tr>
+<tr>
+<td>TTTGG</td>
+<td>355</td>
+<td>1.4466851</td>
+<td>6.1095753</td>
+<td>3</td>
+</tr>
+<tr>
 <td>TCTTT</td>
 <td>455</td>
-<td>1.4755235</td>
+<td>1.4461157</td>
 <td>5.5590916</td>
 <td>1</td>
 </tr>
 <tr>
-<td>TTGGC</td>
-<td>275</td>
-<td>1.4596211</td>
-<td>5.199223</td>
-<td>15</td>
-</tr>
-<tr>
 <td>GAGAT</td>
-<td>385</td>
-<td>1.4368514</td>
+<td>395</td>
+<td>1.4447913</td>
 <td>6.397646</td>
 <td>27</td>
 </tr>
 <tr>
-<td>TTTGG</td>
-<td>345</td>
-<td>1.4345239</td>
-<td>6.1095753</td>
-<td>3</td>
+<td>CAAAA</td>
+<td>560</td>
+<td>1.4338523</td>
+<td>5.123362</td>
+<td>31</td>
 </tr>
 <tr>
 <td>GGTTC</td>
-<td>270</td>
-<td>1.4330826</td>
+<td>275</td>
+<td>1.4305303</td>
 <td>10.398446</td>
 <td>10</td>
 </tr>
 <tr>
+<td>CCCTT</td>
+<td>275</td>
+<td>1.4241698</td>
+<td>5.186479</td>
+<td>39</td>
+</tr>
+<tr>
+<td>CTGTT</td>
+<td>350</td>
+<td>1.4231348</td>
+<td>5.0799813</td>
+<td>10</td>
+</tr>
+<tr>
+<td>ATGGT</td>
+<td>365</td>
+<td>1.4091904</td>
+<td>6.7596393</td>
+<td>47</td>
+</tr>
+<tr>
+<td>TGTTG</td>
+<td>345</td>
+<td>1.4059336</td>
+<td>5.1015162</td>
+<td>40</td>
+</tr>
+<tr>
+<td>CTGTC</td>
+<td>270</td>
+<td>1.4013947</td>
+<td>5.198048</td>
+<td>39</td>
+</tr>
+<tr>
+<td>GAGAC</td>
+<td>300</td>
+<td>1.4007094</td>
+<td>5.856681</td>
+<td>50</td>
+</tr>
+<tr>
+<td>CTTCT</td>
+<td>345</td>
+<td>1.3996824</td>
+<td>7.1246448</td>
+<td>50</td>
+</tr>
+<tr>
+<td>GGCCC</td>
+<td>165</td>
+<td>1.398575</td>
+<td>6.353853</td>
+<td>2</td>
+</tr>
+<tr>
+<td>TGAGT</td>
+<td>360</td>
+<td>1.3898867</td>
+<td>5.7939773</td>
+<td>32</td>
+</tr>
+<tr>
+<td>GGCAC</td>
+<td>220</td>
+<td>1.3840029</td>
+<td>6.2876506</td>
+<td>17</td>
+</tr>
+<tr>
+<td>CCTTT</td>
+<td>340</td>
+<td>1.3793972</td>
+<td>5.068676</td>
+<td>8</td>
+</tr>
+<tr>
 <td>CCTTG</td>
 <td>265</td>
-<td>1.4034137</td>
+<td>1.3754432</td>
 <td>5.187652</td>
 <td>18</td>
 </tr>
 <tr>
-<td>CCCTT</td>
-<td>265</td>
-<td>1.4002901</td>
-<td>5.176106</td>
-<td>14</td>
-</tr>
-<tr>
-<td>CTGTT</td>
-<td>335</td>
-<td>1.3898433</td>
-<td>5.0799813</td>
-<td>10</td>
-</tr>
-<tr>
-<td>CCTTT</td>
-<td>335</td>
-<td>1.3867503</td>
-<td>5.068676</td>
-<td>8</td>
-</tr>
-<tr>
-<td>GGCAC</td>
-<td>215</td>
-<td>1.3800533</td>
-<td>6.2876506</td>
-<td>17</td>
-</tr>
-<tr>
 <td>TTGAA</td>
-<td>465</td>
-<td>1.3564935</td>
+<td>475</td>
+<td>1.3580486</td>
 <td>6.4295163</td>
 <td>7</td>
 </tr>
 <tr>
-<td>CTTGG</td>
-<td>255</td>
-<td>1.3534669</td>
-<td>5.1992235</td>
-<td>18</td>
+<td>GAGCG</td>
+<td>215</td>
+<td>1.3555653</td>
+<td>12.603353</td>
+<td>6</td>
 </tr>
 <tr>
-<td>GTGTT</td>
-<td>325</td>
-<td>1.3513632</td>
-<td>5.091313</td>
-<td>28</td>
-</tr>
-<tr>
-<td>GGCCC</td>
-<td>155</td>
-<td>1.3405302</td>
-<td>6.353853</td>
-<td>2</td>
-</tr>
-<tr>
-<td>TGGTT</td>
-<td>320</td>
-<td>1.330573</td>
-<td>5.091313</td>
-<td>25</td>
+<td>AAGGA</td>
+<td>390</td>
+<td>1.3514621</td>
+<td>5.1952276</td>
+<td>44</td>
 </tr>
 <tr>
 <td>TTCTT</td>
-<td>410</td>
-<td>1.3295923</td>
+<td>420</td>
+<td>1.3348758</td>
 <td>7.941558</td>
 <td>4</td>
 </tr>
 <tr>
 <td>GGGGT</td>
-<td>195</td>
-<td>1.327077</td>
+<td>200</td>
+<td>1.3339773</td>
 <td>8.333022</td>
 <td>45</td>
 </tr>
 <tr>
-<td>AAGGA</td>
-<td>375</td>
-<td>1.3259085</td>
-<td>5.1952276</td>
-<td>44</td>
+<td>CAGAT</td>
+<td>365</td>
+<td>1.3320893</td>
+<td>5.4769697</td>
+<td>34</td>
 </tr>
 <tr>
-<td>CAGAT</td>
-<td>350</td>
-<td>1.3033215</td>
-<td>5.471493</td>
-<td>10</td>
+<td>CTTGG</td>
+<td>255</td>
+<td>1.3264918</td>
+<td>5.1992235</td>
+<td>18</td>
+</tr>
+<tr>
+<td>TGGTT</td>
+<td>320</td>
+<td>1.3040541</td>
+<td>5.091313</td>
+<td>25</td>
+</tr>
+<tr>
+<td>TTGGG</td>
+<td>250</td>
+<td>1.3033829</td>
+<td>6.5135255</td>
+<td>6</td>
 </tr>
 <tr>
 <td>CTGGT</td>
-<td>245</td>
-<td>1.3003898</td>
-<td>5.1992235</td>
-<td>12</td>
+<td>250</td>
+<td>1.3004823</td>
+<td>5.204428</td>
+<td>48</td>
+</tr>
+<tr>
+<td>GCTCC</td>
+<td>195</td>
+<td>1.2919631</td>
+<td>8.277508</td>
+<td>26</td>
+</tr>
+<tr>
+<td>TGATG</td>
+<td>330</td>
+<td>1.2740628</td>
+<td>5.7939773</td>
+<td>46</td>
 </tr>
 <tr>
 <td>TGTCC</td>
 <td>245</td>
-<td>1.2974956</td>
+<td>1.2716361</td>
 <td>5.187652</td>
 <td>21</td>
 </tr>
 <tr>
-<td>GCTCC</td>
-<td>190</td>
-<td>1.2844352</td>
-<td>8.277508</td>
-<td>26</td>
+<td>GGCTT</td>
+<td>240</td>
+<td>1.2484628</td>
+<td>5.199223</td>
+<td>4</td>
 </tr>
 <tr>
 <td>GACAG</td>
 <td>265</td>
-<td>1.2624544</td>
+<td>1.2372932</td>
 <td>5.833254</td>
 <td>27</td>
 </tr>
 <tr>
-<td>GAGCG</td>
-<td>195</td>
-<td>1.2544682</td>
-<td>12.603353</td>
-<td>6</td>
-</tr>
-<tr>
-<td>TTGGG</td>
+<td>GGTGT</td>
 <td>235</td>
-<td>1.2500948</td>
-<td>6.5135255</td>
-<td>6</td>
+<td>1.2251799</td>
+<td>5.21082</td>
+<td>27</td>
 </tr>
 <tr>
 <td>AATGC</td>
 <td>335</td>
-<td>1.2474647</td>
+<td>1.2226022</td>
 <td>10.031068</td>
 <td>21</td>
 </tr>
 <tr>
-<td>GGCTT</td>
-<td>235</td>
-<td>1.2473125</td>
-<td>5.199223</td>
-<td>4</td>
-</tr>
-<tr>
 <td>TTTGC</td>
-<td>295</td>
-<td>1.223892</td>
+<td>300</td>
+<td>1.2198299</td>
 <td>5.0799813</td>
 <td>9</td>
 </tr>
 <tr>
-<td>GGTGT</td>
+<td>GTCCT</td>
 <td>230</td>
-<td>1.223497</td>
-<td>5.21082</td>
-<td>27</td>
+<td>1.1937809</td>
+<td>5.1928453</td>
+<td>47</td>
+</tr>
+<tr>
+<td>GGGCC</td>
+<td>140</td>
+<td>1.1893166</td>
+<td>6.3744006</td>
+<td>43</td>
+</tr>
+<tr>
+<td>ATCCC</td>
+<td>240</td>
+<td>1.1775287</td>
+<td>6.135909</td>
+<td>43</td>
+</tr>
+<tr>
+<td>GCTCT</td>
+<td>225</td>
+<td>1.1678292</td>
+<td>7.789268</td>
+<td>47</td>
+</tr>
+<tr>
+<td>AGCCC</td>
+<td>185</td>
+<td>1.1612303</td>
+<td>6.2799363</td>
+<td>31</td>
 </tr>
 <tr>
 <td>GATCG</td>
 <td>235</td>
-<td>1.181698</td>
-<td>6.1571493</td>
-<td>45</td>
+<td>1.1581463</td>
+<td>6.1633124</td>
+<td>29</td>
+</tr>
+<tr>
+<td>ACCCT</td>
+<td>230</td>
+<td>1.128465</td>
+<td>6.129773</td>
+<td>10</td>
+</tr>
+<tr>
+<td>GTTGG</td>
+<td>215</td>
+<td>1.1209095</td>
+<td>5.2160373</td>
+<td>47</td>
 </tr>
 <tr>
 <td>AGCTC</td>
 <td>225</td>
-<td>1.1288949</td>
+<td>1.1063956</td>
 <td>6.1434464</td>
 <td>25</td>
 </tr>
 <tr>
-<td>ACCCT</td>
+<td>CCCAT</td>
 <td>225</td>
-<td>1.1263824</td>
+<td>1.1039332</td>
 <td>6.129773</td>
-<td>10</td>
+<td>21</td>
 </tr>
 <tr>
 <td>CGGAA</td>
 <td>235</td>
-<td>1.119535</td>
+<td>1.0972222</td>
 <td>9.333206</td>
 <td>1</td>
 </tr>
 <tr>
-<td>CCCAT</td>
-<td>220</td>
-<td>1.1013516</td>
-<td>6.129773</td>
-<td>21</td>
-</tr>
-<tr>
 <td>TCTTG</td>
 <td>265</td>
-<td>1.0994283</td>
+<td>1.0775164</td>
 <td>5.0799813</td>
 <td>21</td>
 </tr>
 <tr>
 <td>ATGCA</td>
 <td>295</td>
-<td>1.0985136</td>
+<td>1.0766199</td>
 <td>5.4714913</td>
 <td>37</td>
 </tr>
 <tr>
 <td>GCTTG</td>
 <td>205</td>
-<td>1.0880812</td>
+<td>1.0663953</td>
 <td>5.199223</td>
 <td>2</td>
 </tr>
 <tr>
 <td>AGCGG</td>
 <td>165</td>
-<td>1.061473</td>
+<td>1.0403174</td>
 <td>12.603352</td>
 <td>7</td>
 </tr>
 <tr>
+<td>TTGCC</td>
+<td>200</td>
+<td>1.0380702</td>
+<td>5.1876516</td>
+<td>3</td>
+</tr>
+<tr>
+<td>AACCT</td>
+<td>285</td>
+<td>1.0378094</td>
+<td>5.4593143</td>
+<td>13</td>
+</tr>
+<tr>
 <td>AACCA</td>
 <td>300</td>
-<td>1.0560105</td>
+<td>1.0349638</td>
 <td>5.1721287</td>
 <td>22</td>
 </tr>
 <tr>
-<td>AACCT</td>
-<td>280</td>
-<td>1.0403365</td>
-<td>5.4593143</td>
-<td>13</td>
-</tr>
-<tr>
 <td>CCGAG</td>
 <td>160</td>
-<td>1.0270164</td>
+<td>1.0065476</td>
 <td>12.575301</td>
 <td>25</td>
 </tr>
 <tr>
-<td>TTGCC</td>
+<td>GTTCC</td>
 <td>190</td>
-<td>1.0062209</td>
-<td>5.1876516</td>
-<td>3</td>
+<td>0.9861668</td>
+<td>6.4845653</td>
+<td>27</td>
 </tr>
 <tr>
 <td>ACTCA</td>
-<td>265</td>
-<td>0.9846043</td>
+<td>270</td>
+<td>0.983188</td>
 <td>5.4593153</td>
 <td>11</td>
 </tr>
 <tr>
 <td>CTCAT</td>
-<td>250</td>
-<td>0.98044825</td>
+<td>255</td>
+<td>0.9801258</td>
 <td>5.7624474</td>
 <td>4</td>
 </tr>
 <tr>
-<td>GTTCC</td>
-<td>185</td>
-<td>0.9797416</td>
-<td>6.4845653</td>
-<td>27</td>
-</tr>
-<tr>
 <td>GAACC</td>
-<td>205</td>
-<td>0.97444224</td>
+<td>210</td>
+<td>0.9783144</td>
 <td>5.820272</td>
 <td>25</td>
 </tr>
 <tr>
 <td>GGCGG</td>
 <td>110</td>
-<td>0.9555928</td>
+<td>0.93654746</td>
 <td>10.637051</td>
 <td>44</td>
 </tr>
 <tr>
+<td>GCGGG</td>
+<td>110</td>
+<td>0.93654746</td>
+<td>6.3886194</td>
+<td>36</td>
+</tr>
+<tr>
+<td>ATCGG</td>
+<td>190</td>
+<td>0.93637353</td>
+<td>6.163312</td>
+<td>30</td>
+</tr>
+<tr>
+<td>GTCTG</td>
+<td>180</td>
+<td>0.9363471</td>
+<td>5.2096424</td>
+<td>41</td>
+</tr>
+<tr>
 <td>GCGGT</td>
-<td>130</td>
-<td>0.8827489</td>
+<td>140</td>
+<td>0.93170583</td>
 <td>13.303162</td>
 <td>8</td>
 </tr>
 <tr>
-<td>GCGGG</td>
-<td>100</td>
-<td>0.86872077</td>
-<td>6.3822303</td>
-<td>45</td>
+<td>CGGGG</td>
+<td>105</td>
+<td>0.8939771</td>
+<td>6.3886194</td>
+<td>46</td>
+</tr>
+<tr>
+<td>GGGCG</td>
+<td>105</td>
+<td>0.8939771</td>
+<td>8.518159</td>
+<td>43</td>
+</tr>
+<tr>
+<td>TCGGA</td>
+<td>170</td>
+<td>0.83780795</td>
+<td>7.395975</td>
+<td>31</td>
+</tr>
+<tr>
+<td>CTTGT</td>
+<td>205</td>
+<td>0.83355045</td>
+<td>5.0850673</td>
+<td>38</td>
 </tr>
 <tr>
 <td>TGCCG</td>
 <td>125</td>
-<td>0.846908</td>
+<td>0.83002883</td>
 <td>14.93275</td>
 <td>23</td>
 </tr>
 <tr>
 <td>AGGCG</td>
-<td>120</td>
-<td>0.7719804</td>
+<td>125</td>
+<td>0.7881193</td>
 <td>6.3016763</td>
 <td>15</td>
 </tr>
 <tr>
 <td>CGGTT</td>
-<td>140</td>
-<td>0.74307984</td>
+<td>150</td>
+<td>0.78028923</td>
 <td>10.398446</td>
 <td>9</td>
 </tr>
 <tr>
+<td>GTGAC</td>
+<td>150</td>
+<td>0.7392424</td>
+<td>6.163313</td>
+<td>32</td>
+</tr>
+<tr>
 <td>GCCGA</td>
 <td>115</td>
-<td>0.738168</td>
+<td>0.723456</td>
 <td>12.575301</td>
 <td>24</td>
 </tr>
 <tr>
+<td>CCCGC</td>
+<td>85</td>
+<td>0.7188745</td>
+<td>6.3460584</td>
+<td>30</td>
+</tr>
+<tr>
+<td>CCCCG</td>
+<td>85</td>
+<td>0.7188745</td>
+<td>10.576764</td>
+<td>29</td>
+</tr>
+<tr>
 <td>CGAGA</td>
-<td>130</td>
-<td>0.61931723</td>
+<td>135</td>
+<td>0.6303192</td>
 <td>9.333206</td>
 <td>26</td>
 </tr>
 <tr>
 <td>CGGGA</td>
-<td>85</td>
-<td>0.5468194</td>
+<td>90</td>
+<td>0.5674459</td>
 <td>6.301676</td>
 <td>24</td>
 </tr>
 <tr>
 <td>CACGG</td>
 <td>85</td>
-<td>0.54560244</td>
+<td>0.5347284</td>
 <td>6.2876506</td>
 <td>37</td>
 </tr>
+<tr>
+<td>CGCCT</td>
+<td>80</td>
+<td>0.5300361</td>
+<td>6.6286345</td>
+<td>30</td>
+</tr>
+<tr>
+<td>CCGCA</td>
+<td>75</td>
+<td>0.47076905</td>
+<td>6.2799363</td>
+<td>36</td>
+</tr>
+<tr>
+<td>CGTTG</td>
+<td>40</td>
+<td>0.20807713</td>
+<td>5.2044277</td>
+<td>46</td>
+</tr>
 </table>
-<p><a href="#summary">Back to summary</a></div>
-</div><div class="footer">Produced by <a href="http://www.bioinformatics.bbsrc.ac.uk/projects/fastqc/">FastQC</a> (version 0.9.1)</div>
-<table>
-<tr><td><a href="dataset_100.dat_fastqc.zip">dataset_100.dat_fastqc.zip  (294.3 KB)</a></td></tr>
-<tr><td><a href="duplication_levels.png">duplication_levels.png  (14.4 KB)</a></td></tr>
-<tr><td><a href="fastqc_data.txt">fastqc_data.txt  (11.6 KB)</a></td></tr>
-<tr><td><a href="fastqc_report.html">fastqc_report.html  (19.8 KB)</a></td></tr>
-<tr><td><a href="kmer_profiles.png">kmer_profiles.png  (172.2 KB)</a></td></tr>
-<tr><td><a href="per_base_gc_content.png">per_base_gc_content.png  (12.0 KB)</a></td></tr>
+</div>
+</body></html><div class="module"><h2>Files created by FastQC</h2><table cellspacing="2" cellpadding="2">
+<tr><td><a href="1000gsample_fastqc.zip">1000gsample_fastqc.zip  (312.3 KB)</a></td></tr>
+<tr><td><a href="duplication_levels.png">duplication_levels.png  (14.5 KB)</a></td></tr>
+<tr><td><a href="fastqc_data.txt">fastqc_data.txt  (15.0 KB)</a></td></tr>
+<tr><td><a href="fastqc_report.html">fastqc_report.html  (25.3 KB)</a></td></tr>
+<tr><td><a href="kmer_profiles.png">kmer_profiles.png  (186.7 KB)</a></td></tr>
+<tr><td><a href="per_base_gc_content.png">per_base_gc_content.png  (12.1 KB)</a></td></tr>
 <tr><td><a href="per_base_n_content.png">per_base_n_content.png  (7.4 KB)</a></td></tr>
-<tr><td><a href="per_base_quality.png">per_base_quality.png  (9.4 KB)</a></td></tr>
-<tr><td><a href="per_base_sequence_content.png">per_base_sequence_content.png  (23.8 KB)</a></td></tr>
-<tr><td><a href="per_sequence_gc_content.png">per_sequence_gc_content.png  (29.4 KB)</a></td></tr>
-<tr><td><a href="per_sequence_quality.png">per_sequence_quality.png  (21.7 KB)</a></td></tr>
+<tr><td><a href="per_base_quality.png">per_base_quality.png  (9.6 KB)</a></td></tr>
+<tr><td><a href="per_base_sequence_content.png">per_base_sequence_content.png  (23.9 KB)</a></td></tr>
+<tr><td><a href="per_sequence_gc_content.png">per_sequence_gc_content.png  (29.6 KB)</a></td></tr>
+<tr><td><a href="per_sequence_quality.png">per_sequence_quality.png  (21.9 KB)</a></td></tr>
+<tr><td><a href="rgFastQCmsd1Ke.log">rgFastQCmsd1Ke.log  (1.3 KB)</a></td></tr>
 <tr><td><a href="sequence_length_distribution.png">sequence_length_distribution.png  (18.8 KB)</a></td></tr>
-<tr><td><a href="summary.txt">summary.txt  (487 B)</a></td></tr>
-</table><p/>
+<tr><td><a href="summary.txt">summary.txt  (509 B)</a></td></tr>
+</table>
 <a href="http://www.bioinformatics.bbsrc.ac.uk/projects/fastqc/">FastQC documentation and full attribution is here</a><br/><hr/>
 FastQC was run by Galaxy using the rgenetics rgFastQC wrapper - see http://rgenetics.org for details and licensing
-</body></html>
\ No newline at end of file
+</div></div><div class="footer">Produced by <a href="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/">FastQC</a> (version 0.10.1)</div>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/fastqc/test-data/gentestdata.sh	Sat Jun 08 04:46:08 2013 -0400
@@ -0,0 +1,3 @@
+#!/bin/bash
+python ../rgFastQC.py -d /tmp/foo -i 1000gsample.fastq -j 1000gsample.fastq -f fastq -o /tmp/foo/fastqc_report.html  -e /home/rlazarus/galaxy-central/tool_dependency_dir/fastqc_dist_0_10_1/0.10.1/fubar/fastqc/9cbae8e9e3da/fastqc_dist/fastqc
+