Mercurial > repos > fubar > edger_test

changeset 11:c788c8078338 draft

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Uploaded
author fubar
date Wed, 12 Jun 2013 05:11:51 -0400
parents 957b847eaed6
children 65a97686ca5d
files rgedgeR/tool_dependencies.xml
diffstat 1 files changed, 5 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/rgedgeR/tool_dependencies.xml	Wed Jun 12 04:21:33 2013 -0400
+++ b/rgedgeR/tool_dependencies.xml	Wed Jun 12 05:11:51 2013 -0400
@@ -13,7 +13,7 @@
                     </repository>
                 </action>
                 <action type="make_directory">$INSTALL_DIR</action>
-                <action type="shell_command">./configure --with-blas --with-lapack --enable-R-shlib --with-readline=no --with-x=no --prefix=$INSTALL_DIR &amp;&amp; make &amp;&amp; make install</action>
+                <action type="shell_command">./configure --with-blas --with-lapack --enable-R-shlib  --with-x=no --prefix=$INSTALL_DIR &amp;&amp; make &amp;&amp; make install</action>
                 <action type="set_environment">
                     <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable>
                     <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>
@@ -30,7 +30,10 @@
     <package name="package_BioCBasics" version="2.12">
         <install version="1.0">
             <actions>
-                <action type="shell_command">$INSTALL_DIR/lib/R/bin/R CMD BATCH installBioC.R </action>
+                <action type="set_environment_for_install">
+                    
+                </action>
+                <action type="shell_command">$R_HOME/bin/R CMD BATCH installBioC.R </action>
             </actions>
         </install>
         <readme>R is a free software environment for statistical computing and graphics