Mercurial > repos > fubar > edger_test
changeset 42:697272b8ef42 draft
Uploaded
| author | fubar |
|---|---|
| date | Sat, 15 Jun 2013 03:49:46 -0400 (2013-06-15) |
| parents | 4afd763390e6 |
| children | 1212dc390f4f |
| files | rgedgeR/rgedgeRpaired.xml |
| diffstat | 1 files changed, 6 insertions(+), 4 deletions(-) [+] |
line wrap: on
line diff
--- a/rgedgeR/rgedgeRpaired.xml Thu Jun 13 01:51:54 2013 -0400 +++ b/rgedgeR/rgedgeRpaired.xml Sat Jun 15 03:49:46 2013 -0400 @@ -26,7 +26,7 @@ <param name="Control_cols" label="Select columns containing control." type="data_column" data_ref="input1" numerical="True" multiple="true" use_header_names="true" size="120" display="checkboxes" optional="true"> </param> - <param name="subjectids" type="text" optional="true" size="120" + <param name="subjectids" type="text" optional="true" size="120" value = "" label="IF SUBJECTS NOT ALL INDEPENDENT! Enter integers to indicate sample pairing for every column in input" help="Leave blank if no pairing, but eg if data from sample id A99 is in columns 2,4 and id C21 is in 3,5 then enter '1,2,1,2'"> <sanitizer> @@ -65,14 +65,16 @@ <param name='input1' value='test_bams2mx.xls' ftype='tabular' /> <param name='treatment_name' value='case' /> <param name='title' value='edgeRtest' /> + <param name='useNDF' value='' /> <param name='fdrtype' value='fdr' /> <param name='priordf' value="0" /> <param name='fdrthresh' value="0.05" /> <param name='control_name' value='control' /> - <param name='Treat_cols' value='3,4,5,9' /> + <param name='subjectids' value='' /> + <param name='Treat_cols' value='3,4,5,9' /> <param name='Control_cols' value='2,6,7,8' /> - <output name='outtab' file='edgeRtest1out.xls' ftype='tabular' compare='diff' /> - <output name='html_file' file='edgeRtest1out.html' ftype='html' compare='diff' lines_diff='20' /> + <output name='outtab' file='edgeRtest1out.xls' compare='diff' /> + <output name='html_file' file='edgeRtest1out.html' compare='diff' lines_diff='20' /> </test> </tests>