Mercurial > repos > fubar > edger_test
comparison rgedgeR/tool_dependencies.xml @ 11:c788c8078338 draft
Uploaded
| author | fubar |
|---|---|
| date | Wed, 12 Jun 2013 05:11:51 -0400 |
| parents | 8d34828733aa |
| children | 65a97686ca5d |
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| 10:957b847eaed6 | 11:c788c8078338 |
|---|---|
| 11 <repository changeset_revision="1301ec7705a8" name="package_readline_6_2" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/"> | 11 <repository changeset_revision="1301ec7705a8" name="package_readline_6_2" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/"> |
| 12 <package name="package_readline_6_2" version="6.2" /> | 12 <package name="package_readline_6_2" version="6.2" /> |
| 13 </repository> | 13 </repository> |
| 14 </action> | 14 </action> |
| 15 <action type="make_directory">$INSTALL_DIR</action> | 15 <action type="make_directory">$INSTALL_DIR</action> |
| 16 <action type="shell_command">./configure --with-blas --with-lapack --enable-R-shlib --with-readline=no --with-x=no --prefix=$INSTALL_DIR && make && make install</action> | 16 <action type="shell_command">./configure --with-blas --with-lapack --enable-R-shlib --with-x=no --prefix=$INSTALL_DIR && make && make install</action> |
| 17 <action type="set_environment"> | 17 <action type="set_environment"> |
| 18 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable> | 18 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable> |
| 19 <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable> | 19 <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable> |
| 20 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/lib/R/bin</environment_variable> | 20 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/lib/R/bin</environment_variable> |
| 21 </action> | 21 </action> |
| 28 </readme> | 28 </readme> |
| 29 </package> | 29 </package> |
| 30 <package name="package_BioCBasics" version="2.12"> | 30 <package name="package_BioCBasics" version="2.12"> |
| 31 <install version="1.0"> | 31 <install version="1.0"> |
| 32 <actions> | 32 <actions> |
| 33 <action type="shell_command">$INSTALL_DIR/lib/R/bin/R CMD BATCH installBioC.R </action> | 33 <action type="set_environment_for_install"> |
| 34 | |
| 35 </action> | |
| 36 <action type="shell_command">$R_HOME/bin/R CMD BATCH installBioC.R </action> | |
| 34 </actions> | 37 </actions> |
| 35 </install> | 38 </install> |
| 36 <readme>R is a free software environment for statistical computing and graphics | 39 <readme>R is a free software environment for statistical computing and graphics |
| 37 WARNING: See custom compilation options above | 40 WARNING: See custom compilation options above |
| 38 Modified from an older version of R by Boris by Ross Lazarus for R 3.0 | 41 Modified from an older version of R by Boris by Ross Lazarus for R 3.0 |