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1 <?xml version="1.0"?>
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2
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2 <tool_dependency>
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4
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3 <package name="package_readline_6_2" version="6.2">
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3
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4 <repository changeset_revision="1301ec7705a8" name="package_readline_6_2" owner="boris" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
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5 </package>
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6 <package name="package_R" version="3.0.1">
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7 <install version="1.0">
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8 <actions>
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9 <action type="download_by_url">http://cran.ms.unimelb.edu.au/src/base/R-3/R-3.0.1.tar.gz</action>
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10 <action type="set_environment_for_install">
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3
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11 <repository changeset_revision="1301ec7705a8" name="package_readline_6_2" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/">
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12 <package name="readline" version="6.2" />
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13 </repository>
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14 </action>
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15 <action type="make_directory">$INSTALL_DIR</action>
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16 <action type="shell_command">./configure --with-blas --with-lapack --enable-R-shlib --with-readline=no --with-x=no --prefix=$INSTALL_DIR && make && make install</action>
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17 <action type="set_environment">
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18 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable>
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19 <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>
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20 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/lib/R/bin</environment_variable>
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21 </action>
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22 </actions>
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23 </install>
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24 <readme>R is a free software environment for statistical computing and graphics
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25 WARNING: See custom compilation options above
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26 Modified from an older version of R by Boris by Ross Lazarus for R 3.0
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27 Added Bioc basics too
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28 </readme>
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29 </package>
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30 <package name="package_BioCBasics" version="2.12">
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31 <install version="1.0">
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32 <actions>
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33 <action type="shell_command">$INSTALL_DIR/lib/R/bin/R CMD BATCH installBioC.R </action>
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34 </actions>
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35 </install>
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36 <readme>R is a free software environment for statistical computing and graphics
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37 WARNING: See custom compilation options above
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38 Modified from an older version of R by Boris by Ross Lazarus for R 3.0
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39 Added Bioc basics via this package installBioC.R script
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40 </readme>
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41 </package>
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42 </tool_dependency>
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