Mercurial > repos > fubar > differential_count_models

diff rgedgeRpaired_nocamera.xml @ 79:17d82de7a2d9 draft

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Uploaded
author fubar
date Wed, 26 Feb 2014 00:23:05 -0500
parents 340d5460f3ff
children 335abf087bc5
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line diff
--- a/rgedgeRpaired_nocamera.xml	Wed Feb 26 00:15:42 2014 -0500
+++ b/rgedgeRpaired_nocamera.xml	Wed Feb 26 00:23:05 2014 -0500
@@ -818,7 +818,7 @@
 out_DESeq2 = F
 out_VOOM = "$out_VOOM"
 edgeR_robust_meth = "ordinary" # control robust deviance options
-doDESeq2 = $DESeq2.doDESeq2 # make these T or F
+doDESeq2 = F
 doVoom = $doVoom
 doCamera = F
 doedgeR = $edgeR.doedgeR
@@ -831,6 +831,7 @@
 
 #if $DESeq2.doDESeq2 == "T":
   out_DESeq2 = "$out_DESeq2"
+  doDESeq2 = T
   DESeq_fitType = "$DESeq2.DESeq_fitType"
 #end if