Mercurial > repos > fubar > differential_count_models

comparison rgedgeRpaired_nocamera.xml @ 79:17d82de7a2d9 draft

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Uploaded
author fubar
date Wed, 26 Feb 2014 00:23:05 -0500
parents 340d5460f3ff
children 335abf087bc5
comparison
equal deleted inserted replaced
78:340d5460f3ff 79:17d82de7a2d9
816 history_gmt_name = "" 816 history_gmt_name = ""
817 out_edgeR = F 817 out_edgeR = F
818 out_DESeq2 = F 818 out_DESeq2 = F
819 out_VOOM = "$out_VOOM" 819 out_VOOM = "$out_VOOM"
820 edgeR_robust_meth = "ordinary" # control robust deviance options 820 edgeR_robust_meth = "ordinary" # control robust deviance options
821 doDESeq2 = $DESeq2.doDESeq2 # make these T or F 821 doDESeq2 = F
822 doVoom = $doVoom 822 doVoom = $doVoom
823 doCamera = F 823 doCamera = F
824 doedgeR = $edgeR.doedgeR 824 doedgeR = $edgeR.doedgeR
825 edgeR_priordf = 10 825 edgeR_priordf = 10
826 826
829 out_VOOM = "$out_VOOM" 829 out_VOOM = "$out_VOOM"
830 #end if 830 #end if
831 831
832 #if $DESeq2.doDESeq2 == "T": 832 #if $DESeq2.doDESeq2 == "T":
833 out_DESeq2 = "$out_DESeq2" 833 out_DESeq2 = "$out_DESeq2"
834 doDESeq2 = T
834 DESeq_fitType = "$DESeq2.DESeq_fitType" 835 DESeq_fitType = "$DESeq2.DESeq_fitType"
835 #end if 836 #end if
836 837
837 #if $edgeR.doedgeR == "T": 838 #if $edgeR.doedgeR == "T":
838 out_edgeR = "$out_edgeR" 839 out_edgeR = "$out_edgeR"