Mercurial > repos > fubar > differential_count_models

comparison rgedgeR/rgedgeRpaired.xml @ 14:8272815ba8ce draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author fubar
date Sat, 27 Jul 2013 02:20:54 -0400
parents f542654faa3b
children 993d35bcf98c
comparison
equal deleted inserted replaced
13:f542654faa3b 14:8272815ba8ce
669 ###sink(stdout(),append=T,type="message") 669 ###sink(stdout(),append=T,type="message")
670 builtin_gmt="" 670 builtin_gmt=""
671 history_gmt="" 671 history_gmt=""
672 out_edgeR = F 672 out_edgeR = F
673 out_DESeq2 = F 673 out_DESeq2 = F
674 out_VOOM = "${out_VOOM}" 674 out_VOOM = "$out_VOOM"
675 doDESeq2 = $DESeq2.doDESeq2 # make these T or F 675 doDESeq2 = $DESeq2.doDESeq2 # make these T or F
676 doVoom = $doVoom 676 doVoom = $doVoom
677 doCamera = F 677 doCamera = F
678 doedgeR = $edgeR.doedgeR 678 doedgeR = $edgeR.doedgeR
679 edgeR_priordf = 0 679 edgeR_priordf = 0
680 680
681 681
682 #if ${doVoom} == "T": 682 #if $doVoom == "T":
683 out_VOOM = "${out_VOOM}" 683 out_VOOM = "$out_VOOM"
684 #end if 684 #end if
685 685
686 #if ${DESeq2.doDESeq2} == "T": 686 #if $DESeq2.doDESeq2 == "T":
687 out_DESeq2 = "${out_DESeq2}" 687 out_DESeq2 = "$out_DESeq2"
688 DESeq_fitType = "${DESeq2.DESeq_fitType}" 688 DESeq_fitType = "$DESeq2.DESeq_fitType"
689 #end if 689 #end if
690 690
691 #if ${edgeR.doedgeR} == "T": 691 #if $edgeR.doedgeR == "T":
692 out_edgeR = "${out_edgeR}" 692 out_edgeR = "$out_edgeR"
693 edgeR_priordf = ${edgeR.edgeR_priordf} 693 edgeR_priordf = $edgeR.edgeR_priordf
694 #end if 694 #end if
695 695
696 Out_Dir = "$html_file.files_path" 696 Out_Dir = "$html_file.files_path"
697 Input = "$input1" 697 Input = "$input1"
698 TreatmentName = "$treatment_name" 698 TreatmentName = "$treatment_name"