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comparison rgedgeRpaired_nocamera.xml @ 78:340d5460f3ff draft

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author fubar
date Wed, 26 Feb 2014 00:15:42 -0500
parents 4a2e7a9725b2
children 17d82de7a2d9
comparison
equal deleted inserted replaced
77:4a2e7a9725b2 78:340d5460f3ff
815 history_gmt = "" 815 history_gmt = ""
816 history_gmt_name = "" 816 history_gmt_name = ""
817 out_edgeR = F 817 out_edgeR = F
818 out_DESeq2 = F 818 out_DESeq2 = F
819 out_VOOM = "$out_VOOM" 819 out_VOOM = "$out_VOOM"
820 edgeR_robust_meth = $edgeR_robust # control robust deviance options 820 edgeR_robust_meth = "ordinary" # control robust deviance options
821 doDESeq2 = $DESeq2.doDESeq2 # make these T or F 821 doDESeq2 = $DESeq2.doDESeq2 # make these T or F
822 doVoom = $doVoom 822 doVoom = $doVoom
823 doCamera = F 823 doCamera = F
824 doedgeR = $edgeR.doedgeR 824 doedgeR = $edgeR.doedgeR
825 edgeR_priordf = 10 825 edgeR_priordf = 10
835 #end if 835 #end if
836 836
837 #if $edgeR.doedgeR == "T": 837 #if $edgeR.doedgeR == "T":
838 out_edgeR = "$out_edgeR" 838 out_edgeR = "$out_edgeR"
839 edgeR_priordf = $edgeR.edgeR_priordf 839 edgeR_priordf = $edgeR.edgeR_priordf
840 edgeR_robust_meth = "$edgeR.edgeR_robust"
840 #end if 841 #end if
841 842
842 843
843 if (sum(c(doedgeR,doVoom,doDESeq2)) == 0) 844 if (sum(c(doedgeR,doVoom,doDESeq2)) == 0)
844 { 845 {