Mercurial > repos > fubar > differential_count_models

diff rgedgeRpaired_nocamera.xml @ 78:340d5460f3ff draft

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author fubar
date Wed, 26 Feb 2014 00:15:42 -0500
parents 4a2e7a9725b2
children 17d82de7a2d9
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line diff
--- a/rgedgeRpaired_nocamera.xml	Tue Feb 25 23:54:59 2014 -0500
+++ b/rgedgeRpaired_nocamera.xml	Wed Feb 26 00:15:42 2014 -0500
@@ -817,7 +817,7 @@
 out_edgeR = F
 out_DESeq2 = F
 out_VOOM = "$out_VOOM"
-edgeR_robust_meth = $edgeR_robust # control robust deviance options
+edgeR_robust_meth = "ordinary" # control robust deviance options
 doDESeq2 = $DESeq2.doDESeq2 # make these T or F
 doVoom = $doVoom
 doCamera = F
@@ -837,6 +837,7 @@
 #if $edgeR.doedgeR == "T":
   out_edgeR = "$out_edgeR"
   edgeR_priordf = $edgeR.edgeR_priordf  
+  edgeR_robust_meth = "$edgeR.edgeR_robust"
 #end if