Mercurial > repos > fubar > data_manager_rnasta

changeset 8:363d6797d366 draft default tip

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Uploaded
author fubar
date Fri, 09 Jan 2015 23:40:09 -0500 (2015-01-10)
parents 5c7efaab6713
children
files data_manager/rnastar_index_builder.py
diffstat 1 files changed, 1 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/rnastar_index_builder.py	Fri Jan 09 23:34:32 2015 -0500
+++ b/data_manager/rnastar_index_builder.py	Fri Jan 09 23:40:09 2015 -0500
@@ -75,7 +75,6 @@
         sys.exit( return_code )
     tmp_stderr.close()
     data_table_entry = dict( value=sequence_id, dbkey=dbkey, name=sequence_name, path=fasta_base_name )
-    data_manager_dict = {}
     data_manager_dict = _add_data_table_entry( data_manager_dict, data_table_name, data_table_entry )
     return data_manager_dict
 
@@ -109,7 +108,7 @@
     except OSError:
         pass
     #build the index
-    data_manager_dict = build_rnastar_index( data_manager_dict = data_manager_dict, fasta_filename = options.fasta_filename, target_directory = target_directory,
+    data_manager_dict = build_rnastar_index( data_manager_dict = {}, fasta_filename = options.fasta_filename, target_directory = target_directory,
       dbkey = dbkey, sequence_id = sequence_id, sequence_name = sequence_name, data_table_name=options.data_table_name,
       sjdbOverhang=options.sjdbOverhang,sjdbGTFfile=options.sjdbGTFfile,
       sjdbFileChrStartEnd=options.sjdbFileChrStartEnd,sjdbGTFtagExonParentTranscript=options.sjdbGTFtagExonParentTranscript,