Mercurial > repos > fubar > data_manager_rnasta

annotate data_manager_conf.xml @ 0:84f6e67cbae5 draft

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Initial commit - problems testing on my ram starved laptop - need to test on a bigger ram machine
author fubar
date Mon, 29 Sep 2014 20:25:10 -0400
parents
children 102bdfdda10b
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84f6e67cbae5 Initial commit - problems testing on my ram starved laptop - need to test on a bigger ram machine
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1 <?xml version="1.0"?>
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2 <data_managers>
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4 <data_manager tool_file="data_manager/rnastar_index_builder.xml" id="rnastar_index_builder" version="0.0.1">
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5 <data_table name="rnastar_indexes">
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6 <output>
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7 <column name="value" />
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8 <column name="dbkey" />
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9 <column name="name" />
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10 <column name="path" output_ref="out_file" >
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11 <move type="directory" relativize_symlinks="True">
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12 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
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13 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/rnastar_index/${value}</target>
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14 </move>
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15 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/rnastar_index/${value}/${path}</value_translation>
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16 <value_translation type="function">abspath</value_translation>
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17 </column>
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18 </output>
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19 </data_table>
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20 </data_manager>
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21
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22 </data_managers>