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changeset 3:98273d7fd5da draft

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Uploaded
author fubar
date Wed, 10 Jul 2013 21:14:48 -0400
parents fb301c318fec
children 16746b3048e4
files rgclustal/rgClustalw.xml rgclustal/tool_dependencies.xml
diffstat 2 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/rgclustal/rgClustalw.xml	Wed Jul 10 21:02:33 2013 -0400
+++ b/rgclustal/rgClustalw.xml	Wed Jul 10 21:14:48 2013 -0400
@@ -1,7 +1,7 @@
 <tool id="clustalw" name="ClustalW" version="0.1">
    <description>multiple sequence alignment program for DNA or proteins</description>
    <requirements>
-      <requirement type="package" version="2.1">package_clustalw</requirement>
+      <requirement type="package" version="2.1">clustalw</requirement>
   </requirements>
    <command> 
     #if ($range.mode=="part")
--- a/rgclustal/tool_dependencies.xml	Wed Jul 10 21:02:33 2013 -0400
+++ b/rgclustal/tool_dependencies.xml	Wed Jul 10 21:14:48 2013 -0400
@@ -1,11 +1,11 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <tool_dependency>
-    <package name="package_clustalw" version="2.1">
+    <package name="clustalw" version="2.1">
         <install version="1.0"> 
            <actions>
                 <action type="make_directory">$INSTALL_DIR</action>
                 <action type="download_by_url" target_filename="clustalw-2.1.tgz">http://www.clustal.org/download/current/clustalw-2.1.tar.gz</action>
-                <action type="shell_command">./configure --prefix=$INSTALL_DIR &amp;&amp; make</action>
+                <action type="shell_command">./configure &amp;&amp; make</action>
                 <action type="move_file"><source>$INSTALL_DIR/src/clustalw2</source><destination>$INSTALL_DIR</destination></action>
                 <action type="set_environment">
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>