Mercurial > repos > fcaramia > somatic_sniper

changeset 24:7e851cec5aa7 draft

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Uploaded
author fcaramia
date Wed, 19 Jun 2013 23:09:12 -0400
parents 1d96132f0bf7
children fa2e9115ae1f
files tool_dependencies.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Wed Jun 19 23:04:33 2013 -0400
+++ b/tool_dependencies.xml	Wed Jun 19 23:09:12 2013 -0400
@@ -19,7 +19,7 @@
 		<action type="shell_command">tar -xzvf master</action>
 		<action type="shell_command">rm -rf  somatic-sniper-master/build-common/</action>
 		<action type="shell_command">mv genome-build-common-077bd57/ somatic-sniper-master/build-common/</action>		
-                <action type="shell_command">cmake -D Samtools_INCLUDE_DIR:PATH=$INSTALL_DIR/bin/samtools somatic-sniper-master/ &amp;&amp; make -C somatic-sniper-master/</action>
+                <action type="shell_command">cmake -D Samtools_INCLUDE_DIR:PATH=$INSTALL_DIR/bin/samtools somatic-sniper-master/ &amp;&amp; ls -laR</action>
                 <action type="move_directory_files">
                     <source_directory>somatic-sniper-master/bin</source_directory>
                     <destination_directory>$INSTALL_DIR/bin</destination_directory>