Mercurial > repos > fcaramia > somatic_sniper

changeset 27:59062e4be319 draft default tip

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Uploaded
author fcaramia
date Wed, 19 Jun 2013 23:34:30 -0400
parents be74f9128239
children
files tool_dependencies.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Wed Jun 19 23:24:07 2013 -0400
+++ b/tool_dependencies.xml	Wed Jun 19 23:34:30 2013 -0400
@@ -15,13 +15,13 @@
                 
                 <action type="download_file">https://github.com/genome/somatic-sniper/archive/master.zip</action>
                 <action type="download_file">https://github.com/genome/build-common/tarball/master</action>
-                <action type="shell_command">unzip master.zip &amp;&amp; ls -la somatic-sniper-master/</action>	
+                <action type="shell_command">unzip master.zip</action>	
 		<action type="shell_command">tar -xzvf master</action>
 		<action type="shell_command">rm -rf  somatic-sniper-master/build-common/</action>
 		<action type="shell_command">mv genome-build-common-077bd57/ somatic-sniper-master/build-common/</action>		
-                <action type="shell_command">cmake -D Samtools_INCLUDE_DIR:PATH=$INSTALL_DIR/bin/samtools somatic-sniper-master/ &amp;&amp; ls -la somatic-sniper-master/</action>
+                <action type="shell_command">cmake -D Samtools_INCLUDE_DIR:PATH=$INSTALL_DIR/bin/samtools somatic-sniper-master/ &amp;&amp; make</action>
                 <action type="move_directory_files">
-                    <source_directory>somatic-sniper-master/bin</source_directory>
+                    <source_directory>bin</source_directory>
                     <destination_directory>$INSTALL_DIR/bin</destination_directory>
                 </action> 
                 <action type="set_environment">