Mercurial > repos > fcaramia > somatic_sniper
changeset 13:3c81335a4534 draft
Uploaded
| author | fcaramia |
|---|---|
| date | Wed, 19 Jun 2013 03:43:10 -0400 |
| parents | 08de625407d0 |
| children | e4d754685f72 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 4 insertions(+), 12 deletions(-) [+] |
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--- a/tool_dependencies.xml Wed Jun 19 03:37:09 2013 -0400 +++ b/tool_dependencies.xml Wed Jun 19 03:43:10 2013 -0400 @@ -28,20 +28,12 @@ <action type="download_file">https://github.com/genome/build-common/tarball/master</action> <action type="shell_command">unzip master.zip</action> <action type="shell_command">tar -xzvf master</action> - <action type="shell_command">rm -rf somatic-sniper-master/build-common</action> - <action type="shell_command">echo $SAMTOOLS_ROOT</action> - <action type="move_directory_files"> - <source_directory>genome-build-common-077bd57</source_directory> - <destination_directory>somatic-sniper-master/build-common</destination_directory> - </action> - - + <action type="shell_command">rm -rf somatic-sniper-master/build-common/</action> + <action type="shell_command">mv genome-build-common-077bd57/ somatic-sniper-master/build-common/</action> <action type="shell_command">cmake somatic-sniper-master/</action> <action type="shell_command">make somatic-sniper-master/</action> - <action type="move_file"> - <source>somatic-sniper-master/bin/bam-somaticsniper</source> - <destination>$INSTALL_DIR/bin</destination> - </action> + <action type="shell_command">mv somatic-sniper-master/bin/bam-somaticsniper $INSTALL_DIR/bin</action> + <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> </action>