Mercurial > repos > fcaramia > somatic_sniper

diff tool_dependencies.xml @ 10:6d709235e747 draft

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Uploaded
author fcaramia
date Wed, 19 Jun 2013 03:32:21 -0400
parents e54d338a2842
children 8376b0ec2bdd
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line diff
--- a/tool_dependencies.xml	Wed Jun 19 03:27:10 2013 -0400
+++ b/tool_dependencies.xml	Wed Jun 19 03:32:21 2013 -0400
@@ -27,8 +27,9 @@
                 <action type="download_file">https://github.com/genome/somatic-sniper/archive/master.zip</action>
                 <action type="download_file">https://github.com/genome/build-common/tarball/master</action>
                 <action type="shell_command">unzip master.zip</action>	
-		<action type="shell_command">tar -xzf master</action>
+		<action type="shell_command">tar -xzfv master</action>
 		<action type="shell_command">rm -rf  somatic-sniper-master/build-common</action>
+		<action type="shell_command">echo $SAMTOOLS_PATH</action>		
 		<action type="move_directory_files">
                     <source_directory>genome-build-common-077bd57</source_directory>
                     <destination_directory>somatic-sniper-master/build-common</destination_directory>