Mercurial > repos > fcaramia > somatic_sniper
comparison tool_dependencies.xml @ 27:59062e4be319 draft default tip
Uploaded
| author | fcaramia |
|---|---|
| date | Wed, 19 Jun 2013 23:34:30 -0400 |
| parents | be74f9128239 |
| children |
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| 26:be74f9128239 | 27:59062e4be319 |
|---|---|
| 13 <destination_directory>$INSTALL_DIR/bin/samtools</destination_directory> | 13 <destination_directory>$INSTALL_DIR/bin/samtools</destination_directory> |
| 14 </action> | 14 </action> |
| 15 | 15 |
| 16 <action type="download_file">https://github.com/genome/somatic-sniper/archive/master.zip</action> | 16 <action type="download_file">https://github.com/genome/somatic-sniper/archive/master.zip</action> |
| 17 <action type="download_file">https://github.com/genome/build-common/tarball/master</action> | 17 <action type="download_file">https://github.com/genome/build-common/tarball/master</action> |
| 18 <action type="shell_command">unzip master.zip && ls -la somatic-sniper-master/</action> | 18 <action type="shell_command">unzip master.zip</action> |
| 19 <action type="shell_command">tar -xzvf master</action> | 19 <action type="shell_command">tar -xzvf master</action> |
| 20 <action type="shell_command">rm -rf somatic-sniper-master/build-common/</action> | 20 <action type="shell_command">rm -rf somatic-sniper-master/build-common/</action> |
| 21 <action type="shell_command">mv genome-build-common-077bd57/ somatic-sniper-master/build-common/</action> | 21 <action type="shell_command">mv genome-build-common-077bd57/ somatic-sniper-master/build-common/</action> |
| 22 <action type="shell_command">cmake -D Samtools_INCLUDE_DIR:PATH=$INSTALL_DIR/bin/samtools somatic-sniper-master/ && ls -la somatic-sniper-master/</action> | 22 <action type="shell_command">cmake -D Samtools_INCLUDE_DIR:PATH=$INSTALL_DIR/bin/samtools somatic-sniper-master/ && make</action> |
| 23 <action type="move_directory_files"> | 23 <action type="move_directory_files"> |
| 24 <source_directory>somatic-sniper-master/bin</source_directory> | 24 <source_directory>bin</source_directory> |
| 25 <destination_directory>$INSTALL_DIR/bin</destination_directory> | 25 <destination_directory>$INSTALL_DIR/bin</destination_directory> |
| 26 </action> | 26 </action> |
| 27 <action type="set_environment"> | 27 <action type="set_environment"> |
| 28 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | 28 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> |
| 29 </action> | 29 </action> |