Mercurial > repos > fcaramia > jointsnvmix

changeset 13:e6964743d2a0 draft

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Uploaded
author fcaramia
date Tue, 18 Jun 2013 02:18:21 -0400
parents d62ff3880b1b
children e9204226dfc7
files jsm_to_vcf.xml
diffstat 1 files changed, 40 insertions(+), 0 deletions(-) [+]
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line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/jsm_to_vcf.xml	Tue Jun 18 02:18:21 2013 -0400
@@ -0,0 +1,40 @@
+<tool id="jsm_to_vcf" name="Convert JSM to VCF" version="1.0">
+
+  <command interpreter="perl">
+  	
+  	jsm_to_vcf.pl $input $output
+  	
+  </command>
+
+  <inputs>
+  	
+  	<param name="input" type="data" format="txt"  label="JSM File"  optional="false"/>
+  	
+  </inputs>
+  
+  <outputs>
+  	<data type="data" format="vcf" name="output" label="${tool.name} result on ${on_string}"/>
+  </outputs>
+  	
+  <help> 
+
+.. class:: infomark
+
+**What it does**
+
+Convert Joint SNV Mix output file into standard VCF format, version 4.1
+
+
+**Input**
+
+Coverage:
+
+	JSM output file	
+
+
+  </help>
+</tool>
+
+
+
+