view jsm_to_vcf.xml @ 15:c89d9d0234cf draft default tip

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<tool id="jsm_to_vcf" name="Convert JSM to VCF" version="1.0">

  <command interpreter="perl">
  	
  	jsm_to_vcf.pl $input $output
  	
  </command>

  <inputs>
  	
  	<param name="input" type="data" format="txt"  label="JSM File"  optional="false"/>
  	
  </inputs>
  
  <outputs>
  	<data type="data" format="vcf" name="output" label="${tool.name} result on ${on_string}"/>
  </outputs>
  	
  <help> 

.. class:: infomark

**What it does**

Convert Joint SNV Mix output file into standard VCF format, version 4.1


**Input**

Coverage:

	JSM output file	


  </help>
</tool>