Mercurial > repos > eugen > bs_seq_test_2
view bsmap_meth_caller.sh @ 10:4d37a7026737 draft default tip
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author | eugen |
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date | Thu, 16 Aug 2012 04:58:24 -0400 |
parents | 1d716ddd7511 |
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#!/bin/bash # # Galaxy wrapper for BSMAP Methylation Caller # set -e #get parameters until [ $# -eq 0 ] do case $1 in input=*) input=${1#input=} ;; method=*) method=${1#method=} ;; output=*) output=${1#output=} ;; tempdir=*) tempdir=${1#tempdir=} ;; ref=*) ref=${1#ref=} ;; esac shift done #echo $ref methratio.py -o $output -d $ref -q $input