Mercurial > repos > ethevenot > univariate
changeset 1:c00848a8e302 draft
planemo upload for repository https://github.com/workflow4metabolomics/univariate.git commit 6f8da7673d82616b52a7efaf64e4a5ccf0c62bbf
| author | ethevenot |
|---|---|
| date | Thu, 11 Jan 2018 10:02:02 -0500 |
| parents | ab2ee3414e4e |
| children | 75a031fa583d |
| files | Makefile build.xml |
| diffstat | 2 files changed, 23 insertions(+), 103 deletions(-) [+] |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Makefile Thu Jan 11 10:02:02 2018 -0500 @@ -0,0 +1,23 @@ +all: + +test: + test/test-univ + +planemo-venv/bin/planemo: planemo-venv + . planemo-venv/bin/activate && pip install --upgrade pip setuptools + . planemo-venv/bin/activate && pip install planemo + +planemo-venv: + virtualenv planemo-venv + +planemolint: planemo-venv/bin/planemo + . planemo-venv/bin/activate && planemo lint + +planemotest: planemo-venv/bin/planemo + . planemo-venv/bin/activate && planemo test --conda_dependency_resolution --galaxy_branch release_17.05 + +clean: + $(RM) -r $(HOME)/.planemo + $(RM) -r planemo-venv + +.PHONY: all clean test planemolint planemotest
--- a/build.xml Tue Oct 24 08:57:25 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,103 +0,0 @@ -<project name="w4m.univariate" default="all"> - - <property name="tool.xml" value="univariate_config.xml"/> - <property name="conda.dir" value="${user.home}/w4m-conda"/> - - <!--~~~ - ~ ALL ~ - ~~~~~--> - - <target name="all"/> - - <!--~~~~ - ~ TEST ~ - ~~~~~--> - - <target name="test" depends="plain.test,planemo.lint,planemo.test"/> - - <!--~~~~~~~~~~ - ~ PLAIN TEST ~ - ~~~~~~~~~~~--> - - <target name="plain.test"> - <exec executable="test/test-univ" failonerror="true"/> - </target> - - <!--~~~~~~~~~~~~ - ~ PLANEMO LINT ~ - ~~~~~~~~~~~~~--> - - <target name="planemo.lint"> - <exec executable="planemo" failonerror="true"> - <arg value="lint"/> - <arg value="${tool.xml}"/> - </exec> - </target> - - <!--~~~~~~~~~~~~ - ~ PLANEMO TEST ~ - ~~~~~~~~~~~~~--> - - <target name="planemo.test" depends="planemo.conda.install"> - <exec executable="planemo" failonerror="true"> - <arg value="test"/> - <arg value="--conda_prefix"/> - <arg value="${conda.dir}"/> - <arg value="--galaxy_branch"/> - <arg value="release_16.07"/> - <arg value="--conda_dependency_resolution"/> - <arg value="${tool.xml}"/> - </exec> - </target> - - <!--~~~~~~~~~~~~~~~~~~~~~ - ~ PLANEMO CONDA INSTALL ~ - ~~~~~~~~~~~~~~~~~~~~~~--> - - <target name="planemo.conda.install" depends="planemo.conda.init"> - <exec executable="planemo" failonerror="true"> - <arg value="conda_install"/> - <arg value="--conda_prefix"/> - <arg value="${conda.dir}"/> - <arg value="${tool.xml}"/> - </exec> - </target> - - <!--~~~~~~~~~~~~~~~~~~ - ~ PLANEMO CONDA INIT ~ - ~~~~~~~~~~~~~~~~~~~--> - - <target name="planemo.conda.init"> - <exec executable="planemo" failonerror="true"> - <arg value="conda_init"/> - <arg value="--conda_prefix"/> - <arg value="${conda.dir}"/> - </exec> - </target> - - <!--~~~~~~~~~~~~~ - ~ PLANEMO SERVE ~ - ~~~~~~~~~~~~~~--> - - <target name="planemo.serve" depends="planemo.conda.install"> - <exec executable="planemo" failonerror="true"> - <arg value="serve"/> - <arg value="--conda_prefix"/> - <arg value="${conda.dir}"/> - <arg value="--galaxy_branch"/> - <arg value="release_16.01"/> - <arg value="--conda_dependency_resolution"/> - <arg value="${tool.xml}"/> - </exec> - </target> - - - <!--~~~~~ - ~ CLEAN ~ - ~~~~~~--> - - <target name="clean"> - <delete dir="${conda.dir}"/> - </target> - -</project>