Mercurial > repos > ethevenot > univariate
annotate test/test-univ @ 3:eb27e0fe9ea3 draft default tip
planemo upload for repository https://github.com/workflow4metabolomics/univariate.git commit 957d0e442c875f7cf8461866fac9695175ab371b
author | ethevenot |
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date | Wed, 28 Feb 2018 06:22:18 -0500 |
parents | ab2ee3414e4e |
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ab2ee3414e4e
planemo upload for repository https://github.com/workflow4metabolomics/univariate.git commit 98e8f4464b2f7321acb010e26e2a1c82fe37096e
ethevenot
parents:
diff
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1 #!/bin/bash |
ab2ee3414e4e
planemo upload for repository https://github.com/workflow4metabolomics/univariate.git commit 98e8f4464b2f7321acb010e26e2a1c82fe37096e
ethevenot
parents:
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changeset
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2 |
ab2ee3414e4e
planemo upload for repository https://github.com/workflow4metabolomics/univariate.git commit 98e8f4464b2f7321acb010e26e2a1c82fe37096e
ethevenot
parents:
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3 # Constants {{{1 |
ab2ee3414e4e
planemo upload for repository https://github.com/workflow4metabolomics/univariate.git commit 98e8f4464b2f7321acb010e26e2a1c82fe37096e
ethevenot
parents:
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changeset
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4 ################################################################ |
ab2ee3414e4e
planemo upload for repository https://github.com/workflow4metabolomics/univariate.git commit 98e8f4464b2f7321acb010e26e2a1c82fe37096e
ethevenot
parents:
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changeset
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5 |
ab2ee3414e4e
planemo upload for repository https://github.com/workflow4metabolomics/univariate.git commit 98e8f4464b2f7321acb010e26e2a1c82fe37096e
ethevenot
parents:
diff
changeset
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6 PROG_PATH=$(dirname $0) |
ab2ee3414e4e
planemo upload for repository https://github.com/workflow4metabolomics/univariate.git commit 98e8f4464b2f7321acb010e26e2a1c82fe37096e
ethevenot
parents:
diff
changeset
|
7 |
ab2ee3414e4e
planemo upload for repository https://github.com/workflow4metabolomics/univariate.git commit 98e8f4464b2f7321acb010e26e2a1c82fe37096e
ethevenot
parents:
diff
changeset
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8 # MAIN {{{1 |
ab2ee3414e4e
planemo upload for repository https://github.com/workflow4metabolomics/univariate.git commit 98e8f4464b2f7321acb010e26e2a1c82fe37096e
ethevenot
parents:
diff
changeset
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9 ################################################################ |
ab2ee3414e4e
planemo upload for repository https://github.com/workflow4metabolomics/univariate.git commit 98e8f4464b2f7321acb010e26e2a1c82fe37096e
ethevenot
parents:
diff
changeset
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10 |
ab2ee3414e4e
planemo upload for repository https://github.com/workflow4metabolomics/univariate.git commit 98e8f4464b2f7321acb010e26e2a1c82fe37096e
ethevenot
parents:
diff
changeset
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11 $PROG_PATH/../univariate_wrapper.R dataMatrix_in $PROG_PATH/../test-data/dataMatrix.tsv sampleMetadata_in $PROG_PATH/../test-data/sampleMetadata.tsv variableMetadata_in $PROG_PATH/../test-data/variableMetadata.tsv facC qual tesC kruskal adjC fdr thrN 0.05 variableMetadata_out $PROG_PATH/outputVariableMetadata.tsv |
ab2ee3414e4e
planemo upload for repository https://github.com/workflow4metabolomics/univariate.git commit 98e8f4464b2f7321acb010e26e2a1c82fe37096e
ethevenot
parents:
diff
changeset
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12 |
ab2ee3414e4e
planemo upload for repository https://github.com/workflow4metabolomics/univariate.git commit 98e8f4464b2f7321acb010e26e2a1c82fe37096e
ethevenot
parents:
diff
changeset
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13 if ! diff "$PROG_PATH/outputVariableMetadata.tsv" "$PROG_PATH/../test-data/output-variableMetadata.tsv" ; then |
ab2ee3414e4e
planemo upload for repository https://github.com/workflow4metabolomics/univariate.git commit 98e8f4464b2f7321acb010e26e2a1c82fe37096e
ethevenot
parents:
diff
changeset
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14 echo "Incorrect output variable metadata." >&2 |
ab2ee3414e4e
planemo upload for repository https://github.com/workflow4metabolomics/univariate.git commit 98e8f4464b2f7321acb010e26e2a1c82fe37096e
ethevenot
parents:
diff
changeset
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15 exit 1 |
ab2ee3414e4e
planemo upload for repository https://github.com/workflow4metabolomics/univariate.git commit 98e8f4464b2f7321acb010e26e2a1c82fe37096e
ethevenot
parents:
diff
changeset
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16 fi |