Mercurial > repos > ethevenot > univariate
diff test/test-univ @ 0:ab2ee3414e4e draft
planemo upload for repository https://github.com/workflow4metabolomics/univariate.git commit 98e8f4464b2f7321acb010e26e2a1c82fe37096e
author | ethevenot |
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date | Tue, 24 Oct 2017 08:57:25 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test/test-univ Tue Oct 24 08:57:25 2017 -0400 @@ -0,0 +1,16 @@ +#!/bin/bash + +# Constants {{{1 +################################################################ + +PROG_PATH=$(dirname $0) + +# MAIN {{{1 +################################################################ + +$PROG_PATH/../univariate_wrapper.R dataMatrix_in $PROG_PATH/../test-data/dataMatrix.tsv sampleMetadata_in $PROG_PATH/../test-data/sampleMetadata.tsv variableMetadata_in $PROG_PATH/../test-data/variableMetadata.tsv facC qual tesC kruskal adjC fdr thrN 0.05 variableMetadata_out $PROG_PATH/outputVariableMetadata.tsv + +if ! diff "$PROG_PATH/outputVariableMetadata.tsv" "$PROG_PATH/../test-data/output-variableMetadata.tsv" ; then + echo "Incorrect output variable metadata." >&2 + exit 1 +fi