Mercurial > repos > estrain > data_manager_ganon
changeset 3:c220590bde7a draft
Uploaded
| author | estrain |
|---|---|
| date | Fri, 05 Jul 2019 07:57:02 -0400 |
| parents | b3585ca01066 |
| children | a855be9e4642 |
| files | data_manager/fetch_ganon.py |
| diffstat | 1 files changed, 10 insertions(+), 10 deletions(-) [+] |
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--- a/data_manager/fetch_ganon.py Fri Jul 05 07:56:34 2019 -0400 +++ b/data_manager/fetch_ganon.py Fri Jul 05 07:57:02 2019 -0400 @@ -16,35 +16,35 @@ try: f = ftplib.FTP(host) - except (socket.error, socket.gaierror), e: - print 'ERROR: cannot reach "%s"' % host + except (socket.error, socket.gaierror) as e: + print('ERROR: cannot reach "%s"' % host) return - print '*** Connected to host "%s"' % host + print('*** Connected to host "%s"' % host) try: f.login() except ftplib.error_perm: - print 'ERROR: cannot login anonymously' + print('ERROR: cannot login anonymously') f.quit() return - print '*** Logged in as "anonymous"' + print('*** Logged in as "anonymous"') try: f.cwd(folder_path) except ftplib.error_perm: - print 'ERROR: cannot CD to "%s"' % folder_path + print('ERROR: cannot CD to "%s"' % folder_path) f.quit() return - print '*** Changed to "%s" folder' % folder_path + print('*** Changed to "%s" folder' % folder_path) try: f.retrbinary('RETR %s' % file_name, open(file_name, 'wb').write) except ftplib.error_perm: - print 'ERROR: cannot read file "%s"' % file_name + print('ERROR: cannot read file "%s"' % file_name) os.unlink(file_name) else: - print '*** Downloaded "%s" to CWD' % file_name + print('*** Downloaded "%s" to CWD' % file_name) f.quit() return[file_name] @@ -70,7 +70,7 @@ data_manager_dict = {} _add_data_table_entry(data_manager_dict=data_manager_dict, - data_table_entry=dict(value=args.rrna, dbkey=args.rrna, name=args.rrna, path=args.output_directory), + data_table_entry=dict(value="ganon"+args.rrna, dbkey="gannon"+args.rrna, name=args.rrna, path=args.output_directory), data_table_name='ganon_databases') open("output_file", 'w').write(json.dumps(data_manager_dict, sort_keys=True))