Mercurial > repos > estrain > data_manager_amrfinderplus_database_builder

changeset 2:d4f61a2a359d draft

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Uploaded
author estrain
date Tue, 08 Mar 2022 02:50:15 +0000
parents cc677cf77613
children 00cd5b1097e3
files data_manager_amrfinderplus_database_builder/data_manager/data_manager_amrfinderplus_database_builder.xml
diffstat 1 files changed, 2 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager_amrfinderplus_database_builder/data_manager/data_manager_amrfinderplus_database_builder.xml	Tue Mar 08 02:50:00 2022 +0000
+++ b/data_manager_amrfinderplus_database_builder/data_manager/data_manager_amrfinderplus_database_builder.xml	Tue Mar 08 02:50:15 2022 +0000
@@ -5,9 +5,10 @@
         <requirement type="package">hmmer</requirement>
     </requirements>
     <command><![CDATA[
-        python '$__tool_directory__/data_manager_amrfinderplus_database_builder.py' 
+        python '$__tool_directory__/data_manager_amrfinderplus_database_builder.py $amrdbpath' 
     ]]></command>
     <inputs>
+      <param name="amrdbpath" type="text" label="Absolute Path of amrFinderPlus databases"/>
     </inputs>
     <outputs>
         <data name="out_file" format="data_manager_json"/>