Mercurial > repos > estrain > data_manager_amrfinderplus_database_builder

changeset 15:c74ed5f206bd draft

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Uploaded
author estrain
date Tue, 08 Mar 2022 18:07:30 +0000
parents d57fecce2d3b
children cac0aa78dad9
files data_manager_amrfinderplus_database_builder/data_manager/data_manager_amrfinderplus_database_builder.xml
diffstat 1 files changed, 4 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager_amrfinderplus_database_builder/data_manager/data_manager_amrfinderplus_database_builder.xml	Tue Mar 08 16:54:50 2022 +0000
+++ b/data_manager_amrfinderplus_database_builder/data_manager/data_manager_amrfinderplus_database_builder.xml	Tue Mar 08 18:07:30 2022 +0000
@@ -5,10 +5,12 @@
         <requirement type="package">hmmer</requirement>
     </requirements>
     <command><![CDATA[
-        python $__tool_directory__/data_manager_amrfinderplus_database_builder.py --path $amrdbpath;
+        python $__tool_directory__/data_manager_amrfinderplus_database_builder.py --path $amrdbpath --name $amrdbname --value $amrdbvalue;
     ]]></command>
     <inputs>
-      <param name="amrdbpath" type="text" label="Absolute Path of amrFinderPlus databases"/>
+      <param name="amrdbpath" type="text" label="Absolute path of new amrFinderPlus database folder"/>
+      <param name="amrdbname" type="text" label="Name of amrFinderPlus database"/>
+      <param name="amrdbvalue" type="text" label="Value of amrFinderPlus database"/>
     </inputs>
     <outputs>
         <data name="out_file" format="data_manager_json"/>