diff macros_conffiles.xml @ 5:b25b3518c2ce draft

planemo upload for repository https://github.com/TAMU-CPT/galaxy-circos-tool commit 7561690774be81155d79a3c38a77c098c59aa9a2

--- a/macros_conffiles.xml	Sun Mar 05 17:02:17 2017 -0500
+++ b/macros_conffiles.xml	Sat Jun 10 12:55:28 2017 -0400
@@ -170,7 +170,7 @@
                 #set x_fill_color_count = int(str($x_fill_color).split('-')[1]) + 1
                 #set x_fill_color_qw = ' '.join(["%s-%s" % ($action.action.action_value, $i) for i in range(1, $x_fill_color_count)])
 
-                #if str($action.action.action_select) == "fill_color_value":
+                #if str($action.action.action_select) == "fill_color_value" or str($action.action.action_select) == "color_value" :
                     fill_color = eval(qw(${x_fill_color_qw})[remap_int(var(value), ${action.action.min_value}, ${action.action.max_value}, 0, ${x_fill_color_count - 1})])
                 #else
                     $action.action.action_select = ${action.action.action_value}
@@ -328,7 +328,9 @@
     <configfile name="test_case_conf"><![CDATA[
 <!--
 mkdir -p test-data/my-test-case/;
-cp ${genome_fasta} test-data/my-test-case/input.fa;
+#if $reference_genome.reference_genome_source == 'history':
+    cp ${genome_fasta} test-data/my-test-case/input.fa;
+#end if
 #if $ideogram.bands:
 cp ${ideogram.bands} test-data/my-test-case/bands.${ideogram.bands.ext};
 #end if