Mercurial > repos > eric-rasche > circos
comparison macros_conffiles.xml @ 5:b25b3518c2ce draft
planemo upload for repository https://github.com/TAMU-CPT/galaxy-circos-tool commit 7561690774be81155d79a3c38a77c098c59aa9a2
| author | eric-rasche |
|---|---|
| date | Sat, 10 Jun 2017 12:55:28 -0400 |
| parents | e8475d0195fe |
| children | 169adf243c0a |
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| 4:4ff5ff4c84fa | 5:b25b3518c2ce |
|---|---|
| 168 #for $action in $rule.actions: | 168 #for $action in $rule.actions: |
| 169 #set x_fill_color = $action.action.action_value | 169 #set x_fill_color = $action.action.action_value |
| 170 #set x_fill_color_count = int(str($x_fill_color).split('-')[1]) + 1 | 170 #set x_fill_color_count = int(str($x_fill_color).split('-')[1]) + 1 |
| 171 #set x_fill_color_qw = ' '.join(["%s-%s" % ($action.action.action_value, $i) for i in range(1, $x_fill_color_count)]) | 171 #set x_fill_color_qw = ' '.join(["%s-%s" % ($action.action.action_value, $i) for i in range(1, $x_fill_color_count)]) |
| 172 | 172 |
| 173 #if str($action.action.action_select) == "fill_color_value": | 173 #if str($action.action.action_select) == "fill_color_value" or str($action.action.action_select) == "color_value" : |
| 174 fill_color = eval(qw(${x_fill_color_qw})[remap_int(var(value), ${action.action.min_value}, ${action.action.max_value}, 0, ${x_fill_color_count - 1})]) | 174 fill_color = eval(qw(${x_fill_color_qw})[remap_int(var(value), ${action.action.min_value}, ${action.action.max_value}, 0, ${x_fill_color_count - 1})]) |
| 175 #else | 175 #else |
| 176 $action.action.action_select = ${action.action.action_value} | 176 $action.action.action_select = ${action.action.action_value} |
| 177 #end if | 177 #end if |
| 178 #end for | 178 #end for |
| 326 </xml> | 326 </xml> |
| 327 <xml name="test_case"> | 327 <xml name="test_case"> |
| 328 <configfile name="test_case_conf"><![CDATA[ | 328 <configfile name="test_case_conf"><![CDATA[ |
| 329 <!-- | 329 <!-- |
| 330 mkdir -p test-data/my-test-case/; | 330 mkdir -p test-data/my-test-case/; |
| 331 cp ${genome_fasta} test-data/my-test-case/input.fa; | 331 #if $reference_genome.reference_genome_source == 'history': |
| 332 cp ${genome_fasta} test-data/my-test-case/input.fa; | |
| 333 #end if | |
| 332 #if $ideogram.bands: | 334 #if $ideogram.bands: |
| 333 cp ${ideogram.bands} test-data/my-test-case/bands.${ideogram.bands.ext}; | 335 cp ${ideogram.bands} test-data/my-test-case/bands.${ideogram.bands.ext}; |
| 334 #end if | 336 #end if |
| 335 #for $idx, $data in enumerate($sec_tdd.data): | 337 #for $idx, $data in enumerate($sec_tdd.data): |
| 336 #if str($data.plot_format.plot_format_select) in ('histogram', 'heatmap'): | 338 #if str($data.plot_format.plot_format_select) in ('histogram', 'heatmap'): |