Mercurial > repos > eric-rasche > apollo

#!/usr/bin/env python
import json
import base64
import argparse

if __name__ == '__main__':
    parser = argparse.ArgumentParser(description='Sample script to add an attribute to a feature via web services')
    parser.add_argument('apollo', help='Complete Apollo URL')
    parser.add_argument('json', type=file, help='JSON Data')
    parser.add_argument('external_apollo_url')

    args = parser.parse_args()

    # https://fqdn/apollo/annotator/loadLink?loc=NC_005880:0..148317&organism=326&tracks=
    data = json.load(args.json)

    # This is base64 encoded to get past the toolshed's filters.
    HTML_TPL = """
<html><head><title>Embedded Apollo Access</title><style type="text/css">body {{margin: 0;}} iframe {{border: 0;width: 100%;height: 100%}}</style></head><body><iframe src="{base_url}/annotator/loadLink?loc={chrom}&organism={orgId}&tracklist=1"></iframe></body></html>
    """
    # HTML_TPL = base64.b64decode(HTML_TPL.replace('\n', ''))

    print HTML_TPL.format(base_url=args.external_apollo_url, chrom="", orgId=data[0]['id'])
author	eric-rasche
date	Thu, 12 Jan 2017 11:53:44 -0500
parents	d4ae83dedb14
children	7610987e0c48